RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 EMSYQ7Z589 1322 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 HAS3O00219 553 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 STAM2O75886 525 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 CXCL10P02778 98 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 CYP21A2P08686 494 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 GSPT1P15170 499 aaKnown RBP17.8■□□□□ 0.44
SKA3-204ENST00000462482 CHMLP26374 656 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 CUL5Q93034 780 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 CTAGE1Q96RT6 745 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 IL25Q9H293 177 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 COG5Q9UP83 839 aa17.8■□□□□ 0.44
SKA3-204ENST00000462482 C17orf102A2RUQ5 167 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 E7EWF7 191 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 HOXD8P13378 290 aaPredicted RBP17.79■□□□□ 0.44
SKA3-204ENST00000462482 UBA1P22314 1058 aaKnown RBP17.79■□□□□ 0.44
SKA3-204ENST00000462482 PDE4AP27815 886 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 KIF5BP33176 963 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 NEDD9Q14511 834 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 HSDL1Q3SXM5 330 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 CTCFLQ8NI51 663 aaPredicted RBP17.79■□□□□ 0.44
SKA3-204ENST00000462482 RAD9AQ99638 391 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 SCN10AQ9Y5Y9 1956 aa17.79■□□□□ 0.44
SKA3-204ENST00000462482 NBNO60934 754 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 LGR5O75473 907 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 RGS20O76081 388 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 THPOP40225 353 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 PTH1RQ03431 593 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 ZNF618Q5T7W0 954 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 CASC1Q6TDU7 716 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 IL31RAQ8NI17 732 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 SMARCC2Q8TAQ2 1214 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 PIBF1Q8WXW3 757 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 ATP6V0A1Q93050 837 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 RRP36Q96EU6 259 aaKnown RBP17.78■□□□□ 0.44
SKA3-204ENST00000462482 SEC63Q9UGP8 760 aaKnown RBP17.78■□□□□ 0.44
SKA3-204ENST00000462482 CDH23Q9H251 3354 aa17.78■□□□□ 0.44
SKA3-204ENST00000462482 RSPH10B2B2RC85 870 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 H3BRB1 525 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 GJB5O95377 273 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 RSPH10BP0C881 870 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 GNAT1P11488 350 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 DEFB103AP81534 67 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 ZNF200P98182 395 aaPredicted RBP17.77■□□□□ 0.44
SKA3-204ENST00000462482 TROAPQ12815 778 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 GRB10Q13322 594 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 USP26Q9BXU7 913 aa17.77■□□□□ 0.44
SKA3-204ENST00000462482 TUT1Q9H6E5 874 aaKnown RBP17.77■□□□□ 0.44
SKA3-204ENST00000462482 SUPT16HQ9Y5B9 1047 aaKnown RBP17.77■□□□□ 0.44
SKA3-204ENST00000462482 EPOPA6NHQ4 379 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 SGSM2O43147 1006 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 FIBPO43427 364 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 AMHP03971 560 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 GNAQP50148 359 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 SP2Q02086 613 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 TFF2Q03403 129 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 GPNMBQ14956 572 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 TRIM71Q2Q1W2 868 aaKnown RBP17.76■□□□□ 0.43
SKA3-204ENST00000462482 NFXL1Q6ZNB6 911 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 SERINC5Q86VE9 423 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 HLA-CQ95604 372 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 ZFP91Q96JP5 570 aaPredicted RBP17.76■□□□□ 0.43
SKA3-204ENST00000462482 TGS1Q96RS0 853 aaKnown RBP17.76■□□□□ 0.43
SKA3-204ENST00000462482 MAP3K14Q99558 947 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 LZTS2Q9BRK4 669 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 LMCD1Q9NZU5 365 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 ZNF215Q9UL58 517 aaPredicted RBP17.76■□□□□ 0.43
SKA3-204ENST00000462482 LAMA4Q16363 1823 aa17.76■□□□□ 0.43
SKA3-204ENST00000462482 TTC28Q96AY4 2481 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 CYTH3O43739 400 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 DDAH1O94760 285 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 LGALS2P05162 132 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 FAM117BQ6P1L5 589 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 XRRA1Q6P2D8 792 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 METTL7BQ6UX53 244 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 TMCO2Q7Z6W1 182 aaPredicted RBP17.75■□□□□ 0.43
SKA3-204ENST00000462482 NLRX1Q86UT6 975 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 TMTC2Q8N394 836 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 INPP4AQ96PE3 977 aaPredicted RBP17.75■□□□□ 0.43
SKA3-204ENST00000462482 C16orf70Q9BSU1 422 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 SENP2Q9HC62 589 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 RTEL1Q9NZ71 1219 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 MTUS1Q9ULD2 1270 aa17.75■□□□□ 0.43
SKA3-204ENST00000462482 LCHNA4D1U4 455 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 CCDC69A6NI79 296 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 SPATA31C2B4DYI2 1134 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 CAND2O75155 1236 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 ARHGEF15O94989 841 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 SMIM10L2AP0DMW4 78 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 SMIM10L2BP0DMW5 78 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 BMP1P13497 986 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 ICAM3P32942 547 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 SLC35G1Q2M3R5 365 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 CYFIP1Q7L576 1253 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 ZNF654Q8IZM8 581 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 MYOCDQ8IZQ8 938 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 GIMAP8Q8ND71 665 aaPredicted RBP17.74■□□□□ 0.43
SKA3-204ENST00000462482 DBF4BQ8NFT6 615 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 SEPT8Q92599 483 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 MAP4K1Q92918 833 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 MTA3Q9BTC8 594 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms