RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 CSF2RAP15509 400 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 CDC27P30260 824 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 SP2Q02086 613 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 WWC2Q6AWC2 1192 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 PPP1R18Q6NYC8 613 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 ZNF713Q8N859 430 aaPredicted RBP18.52■□□□□ 0.56
COL7A1-203ENST00000459756 KAT2BQ92831 832 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 SPATA33Q96N06 139 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 KATNAL1Q9BW62 490 aa18.52■□□□□ 0.56
COL7A1-203ENST00000459756 NID2Q14112 1375 aa18.52■□□□□ 0.55
COL7A1-203ENST00000459756 SPDYE3A6NKU9 549 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 FIBPO43427 364 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 NAPAP54920 295 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 CHMP4BP1P59074 171 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 SESTD1Q86VW0 696 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 MLXIPQ9HAP2 919 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 ZSWIM6Q9HCJ5 1215 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 RTEL1Q9NZ71 1219 aa18.51■□□□□ 0.55
COL7A1-203ENST00000459756 F2P00734 622 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 ADD1P35611 737 aaKnown RBP18.5■□□□□ 0.55
COL7A1-203ENST00000459756 NEDD9Q14511 834 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 UBE2SQ16763 222 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 HSDL1Q3SXM5 330 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 PSRC1Q6PGN9 363 aaPredicted RBP18.5■□□□□ 0.55
COL7A1-203ENST00000459756 RUFY3Q7L099 469 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 C16orf59Q7L2K0 433 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 NLRX1Q86UT6 975 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.5■□□□□ 0.558e-9■■■■■ 29.3
COL7A1-203ENST00000459756 GLT8D2Q9H1C3 349 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 EHMT1Q9H9B1 1298 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 IL23AQ9NPF7 189 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 RIC8AQ9NPQ8 531 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 BARHL2Q9NY43 387 aa18.5■□□□□ 0.55
COL7A1-203ENST00000459756 UMODL1Q5DID0 1318 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 STXBP3O00186 592 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 CYP2C9P11712 490 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 PSEN2P49810 448 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 EVCP57679 992 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 SMAD3P84022 425 aaKnown RBP18.49■□□□□ 0.55
COL7A1-203ENST00000459756 MFSD10Q14728 455 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 TMEM240Q5SV17 173 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 FAM109BQ6ICB4 259 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-203ENST00000459756 TYW1BQ6NUM6 668 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 METTL7BQ6UX53 244 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 DEFB123Q8N688 67 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 PPP1R13LQ8WUF5 828 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 CDHR1Q96JP9 859 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 SENP7Q9BQF6 1050 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 TM6SF1Q9BZW5 370 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 WNT8AQ9H1J5 351 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 PCDHA6Q9UN73 950 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 NOD1Q9Y239 953 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 PCDHA8Q9Y5H6 950 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 CYP46A1Q9Y6A2 500 aa18.49■□□□□ 0.55
COL7A1-203ENST00000459756 HAS3O00219 553 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 PITPNM1O00562 1244 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 NOP56O00567 594 aaKnown RBP18.48■□□□□ 0.55
COL7A1-203ENST00000459756 SORBS3O60504 671 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 FOSP01100 380 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-203ENST00000459756 ZNF286BP0CG31 522 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 ADCY7P51828 1080 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 CCL23P55773 120 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 SEMA3FQ13275 785 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 PTGISQ16647 500 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 PFKFB3Q16875 520 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-203ENST00000459756 C7orf31Q8N865 590 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 GIMAP8Q8ND71 665 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-203ENST00000459756 GPRASP2Q96D09 838 aa18.48■□□□□ 0.55
COL7A1-203ENST00000459756 SMCO2A6NFE2 343 aa18.47■□□□□ 0.55
COL7A1-203ENST00000459756 ACRP10323 421 aa18.47■□□□□ 0.55
COL7A1-203ENST00000459756 BFSP2Q13515 415 aa18.47■□□□□ 0.55
COL7A1-203ENST00000459756 KIAA0753Q2KHM9 967 aa18.47■□□□□ 0.55
COL7A1-203ENST00000459756 ZNF365Q70YC5 407 aa18.47■□□□□ 0.55
COL7A1-203ENST00000459756 CYFIP1Q7L576 1253 aa18.47■□□□□ 0.55
COL7A1-203ENST00000459756 RPUSD2Q8IZ73 545 aaKnown RBP18.47■□□□□ 0.55
COL7A1-203ENST00000459756 GTF2IRD1Q9UHL9 959 aa18.47■□□□□ 0.55
COL7A1-203ENST00000459756 PRPF3O43395 683 aaKnown RBP18.46■□□□□ 0.55
COL7A1-203ENST00000459756 SCG2P13521 617 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 ITGB5P18084 799 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 PDIA3P30101 505 aaKnown RBP18.46■□□□□ 0.55
COL7A1-203ENST00000459756 RASIP1Q5U651 963 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 GDF6Q6KF10 455 aaPredicted RBP18.46■□□□□ 0.55
COL7A1-203ENST00000459756 Q7L0L9 218 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 CCDC155Q8N6L0 562 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 RETREG2Q8NC44 543 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 C16orf70Q9BSU1 422 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 ALG1Q9BT22 464 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 MTIF3Q9H2K0 278 aaKnown RBP18.46■□□□□ 0.55
COL7A1-203ENST00000459756 BCAS3Q9H6U6 928 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 HDAC6Q9UBN7 1215 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 UBIAD1Q9Y5Z9 338 aa18.46■□□□□ 0.55
COL7A1-203ENST00000459756 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.45■□□□□ 0.54
COL7A1-203ENST00000459756 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.45■□□□□ 0.54
COL7A1-203ENST00000459756 MAFGO15525 162 aa18.45■□□□□ 0.54
COL7A1-203ENST00000459756 FGBP02675 491 aa18.45■□□□□ 0.54
COL7A1-203ENST00000459756 PFKMP08237 780 aa18.45■□□□□ 0.54
COL7A1-203ENST00000459756 RFC2P35250 354 aa18.45■□□□□ 0.54
COL7A1-203ENST00000459756 AKAP17AQ02040 695 aaKnown RBP18.45■□□□□ 0.54
COL7A1-203ENST00000459756 AP3B2Q13367 1082 aa18.45■□□□□ 0.54
COL7A1-203ENST00000459756 MTMR1Q13613 665 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms