RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 KRTAP4-2Q9BYR5 136 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 UTP6Q9NYH9 597 aaKnown RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 CGNQ9P2M7 1197 aaKnown RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 FBXO2Q9UK22 296 aaPredicted RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 YBX2Q9Y2T7 364 aaKnown RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 SLC45A1Q9Y2W3 748 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 POLR3KQ9Y2Y1 108 aaPredicted RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 IKBKGQ9Y6K9 419 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 RICTORQ6R327 1708 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 MYOCOSA0A1B0GUC4 107 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 ENPP3O14638 875 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 SEMA7AO75326 666 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 MYL1P05976 194 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 U2AF1L5P0DN76 240 aaPredicted RBP6.35□□□□□ -1.39
VPS41-209ENST00000457055 NAT2P11245 290 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 PAX7P23759 505 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 GBP2P32456 591 aaPredicted RBP6.35□□□□□ -1.39
VPS41-209ENST00000457055 ABCD1P33897 745 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 PIK3CAP42336 1068 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 U2AF1Q01081 240 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS41-209ENST00000457055 TRIM29Q14134 588 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 TMEM95Q3KNT9 176 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 SNAP47Q5SQN1 464 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 ARHGEF25Q86VW2 580 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 SUGP1Q8IWZ8 645 aaKnown RBP6.35□□□□□ -1.39
VPS41-209ENST00000457055 TMEM74Q96NL1 305 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 SRRTQ9BXP5 876 aaKnown RBP6.35□□□□□ -1.39
VPS41-209ENST00000457055 TGIF2Q9GZN2 237 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 TSPY26PQ9H489 355 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 CLIC5Q9NZA1 410 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 SUN2Q9UH99 717 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 EVLQ9UI08 416 aaPredicted RBP6.35□□□□□ -1.39
VPS41-209ENST00000457055 INTUQ9ULD6 942 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 MAFFQ9ULX9 164 aa6.35□□□□□ -1.39
VPS41-209ENST00000457055 NCANO14594 1321 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 A0A1W2PRQ8 180 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 SLC26A4O43511 780 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 HTATSF1O43719 755 aaKnown RBP6.34□□□□□ -1.39
VPS41-209ENST00000457055 PEX10O60683 326 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 TPPPO94811 219 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 HNRNPCP07910 306 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS41-209ENST00000457055 MYL3P08590 195 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 CCDC159P0C7I6 412 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 RPL17P18621 184 aaKnown RBP6.34□□□□□ -1.39
VPS41-209ENST00000457055 GBP1P32455 592 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 TRPC1P48995 793 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 DLG4P78352 724 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 TMED1Q13445 227 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 SIM2Q14190 667 aaPredicted RBP6.34□□□□□ -1.39
VPS41-209ENST00000457055 SNX17Q15036 470 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 C10orf62Q5T681 223 aaPredicted RBP6.34□□□□□ -1.39
VPS41-209ENST00000457055 IQCF2Q8IXL9 164 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 MYRIPQ8NFW9 859 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 TSR2Q969E8 191 aaKnown RBP6.34□□□□□ -1.39
VPS41-209ENST00000457055 GMLQ99445 158 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 KIF2CQ99661 725 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 ASCC2Q9H1I8 757 aaPredicted RBP6.34□□□□□ -1.39
VPS41-209ENST00000457055 SLKQ9H2G2 1235 aaPredicted RBP6.34□□□□□ -1.39
VPS41-209ENST00000457055 PPCSQ9HAB8 311 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 ARNT2Q9HBZ2 717 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 ZNF69Q9UC07 566 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 EBF1Q9UH73 591 aa6.34□□□□□ -1.39
VPS41-209ENST00000457055 UHRF1BP1Q6BDS2 1440 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 B8ZZF3 427 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 SORBS3O60504 671 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 PSPNO60542 156 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 DNAJA2O60884 412 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 SETSIPP0DME0 302 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 GALK1P51570 392 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 PWP1Q13610 501 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 MPP2Q14168 576 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 INO80DQ53TQ3 878 aaPredicted RBP6.33□□□□□ -1.4
VPS41-209ENST00000457055 CCDC158Q5M9N0 1113 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 TMEM132EQ6IEE7 984 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 PDXDC1Q6P996 788 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 REC114Q7Z4M0 266 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 MYO1HQ8N1T3 1032 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 GOLM1Q8NBJ4 401 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 MNS1Q8NEH6 495 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 SYAP1Q96A49 352 aaPredicted RBP6.33□□□□□ -1.4
VPS41-209ENST00000457055 PDGFDQ9GZP0 370 aaPredicted RBP6.33□□□□□ -1.4
VPS41-209ENST00000457055 TMX1Q9H3N1 280 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 CD248Q9HCU0 757 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 MRS2Q9HD23 443 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 CHCHD3Q9NX63 227 aaKnown RBP6.33□□□□□ -1.4
VPS41-209ENST00000457055 VTI1BQ9UEU0 232 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 IP6K2Q9UHH9 426 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 ARHGEF40Q8TER5 1519 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 POGZQ7Z3K3 1410 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 C3P01024 1663 aa6.33□□□□□ -1.4
VPS41-209ENST00000457055 IQGAP2Q13576 1575 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 TEX51A0A1B0GUA7 166 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 PRRG2O14669 202 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 TPM3P06753 285 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 ZNF853P0CG23 659 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 NMIQ13287 307 aaPredicted RBP6.32□□□□□ -1.4
VPS41-209ENST00000457055 SLC4A8Q2Y0W8 1093 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 ZNF394Q53GI3 561 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 FAM133BQ5BKY9 247 aaKnown RBP6.32□□□□□ -1.4
VPS41-209ENST00000457055 MFSD4BQ5TF39 518 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms