RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ARHGEF6Q15052 776 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 TTF1Q15361 905 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 CFAP58Q5T655 872 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 CCDC30Q5VVM6 783 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 CDCA2Q69YH5 1023 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 REC114Q7Z4M0 266 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 LRRC49Q8IUZ0 686 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 TMEM151BQ8IW70 566 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 LILRB1Q8NHL6 650 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 ASAP3Q8TDY4 903 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 IPCEF1Q8WWN9 437 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 ZNF75CPQ92670 426 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 PRAM1Q96QH2 718 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 INCENPQ9NQS7 918 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 KCTD5Q9NXV2 234 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 ZFATQ9P243 1243 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 ZNRF3Q9ULT6 936 aa5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 TRPM3Q9HCF6 1732 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-209ENST00000456975 SBF2Q86WG5 1849 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ALS2Q96Q42 1657 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ARHGEF28Q8N1W1 1705 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 A0A087X0B3 334 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 FAM86C2PA6NEL3 165 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 TBKBP1A7MCY6 615 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PHF20L1A8MW92 1017 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 KCNQ2O43526 872 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PDE8AO60658 829 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 KATNA1O75449 491 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 CYP1A2P05177 515 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 MYL1P05976 194 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 GLULP15104 373 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 TIMP2P16035 220 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 EPB42P16452 691 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 STAT3P40763 770 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 CASP2P42575 452 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 KIF11P52732 1056 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 CSE1LP55060 971 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SFSWAPQ12872 951 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 RBBP5Q15291 538 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SHROOM1Q2M3G4 852 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 TM4SF20Q53R12 229 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 C10orf76Q5T2E6 689 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 MPRIPQ6WCQ1 1025 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PODNQ7Z5L7 613 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SRLQ86TD4 932 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SPATS2Q86XZ4 545 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 NIM1KQ8IY84 436 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SCLT1Q96NL6 688 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SH3GL1Q99961 368 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 MIR1-1HGQ9H1L0 117 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 CCDC68Q9H2F9 335 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ZNHIT6Q9NWK9 470 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PCDHB14Q9Y5E9 798 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 LRRFIP2Q9Y608 721 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 J3QL48 77 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PLIN1O60240 522 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 APBA3O96018 575 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 EGFRP00533 1210 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 GYS1P13807 737 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 CDC27P30260 824 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 L1CAMP32004 1257 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 KIF5BP33176 963 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ZNF165P49910 485 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ICA1Q05084 483 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PTPN11Q06124 597 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 TBC1D8BQ0IIM8 1120 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 TERF2Q15554 542 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SPDYCQ5MJ68 293 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 TSHZ3Q63HK5 1081 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ARMC9Q7Z3E5 817 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 C14orf80Q86SX3 495 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 RPAP2Q8IXW5 612 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 VPS52Q8N1B4 723 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 GRIN3AQ8TCU5 1115 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ZNF483Q8TF39 744 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 CHAC2Q8WUX2 184 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 RTF1Q92541 710 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 USP6NLQ92738 828 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ZBTB10Q96DT7 871 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 NSUN5Q96P11 429 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 CAMKK2Q96RR4 588 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 LRRCC1Q9C099 1032 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 RUBCNLQ9H714 662 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ARNT2Q9HBZ2 717 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 SH3GLB2Q9NR46 395 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PSD3Q9NYI0 1048 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PCDHB10Q9UN67 800 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 PPP2R3BQ9Y5P8 575 aa5.42□□□□□ -1.54
CCDC88A-209ENST00000456975 ROCK2O75116 1388 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 A0A1W2PQH9 124 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 FOXN3O00409 490 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 MSX1P28360 303 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 MATR3P43243 847 aaKnown RBP eCLIP5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 RNF144AP50876 292 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 CTAG1AP78358 180 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 FOXC1Q12948 553 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 GRIK3Q13003 919 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 NOLC1Q14978 699 aaKnown RBP eCLIP5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 RASA2Q15283 850 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 TTLL5Q6EMB2 1281 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms