RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 MAD2L2Q9UI95 211 aa15.41■□□□□ 0.06
HMGB3-204ENST00000448905 INSL6Q9Y581 213 aa15.41■□□□□ 0.06
HMGB3-204ENST00000448905 LRRC37A2A6NM11 1700 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 PNMA6FA0A0J9YX94 578 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 RSPH10B2B2RC85 870 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 NOP56O00567 594 aaKnown RBP15.4■□□□□ 0.06
HMGB3-204ENST00000448905 NBNO60934 754 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 STAM2O75886 525 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 GJB5O95377 273 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 GGPS1O95749 300 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 AMHP03971 560 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 RSPH10BP0C881 870 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 GNAT1P11488 350 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 HOXA13P31271 388 aaPredicted RBP15.4■□□□□ 0.06
HMGB3-204ENST00000448905 GPNMBQ14956 572 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 PGM5Q15124 567 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 SEC23AQ15436 765 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 HSDL1Q3SXM5 330 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 ZNF618Q5T7W0 954 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 RALYLQ86SE5 291 aaKnown RBP15.4■□□□□ 0.06
HMGB3-204ENST00000448905 FCHSD1Q86WN1 690 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 HOMER1Q86YM7 354 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 DHX38Q92620 1227 aaKnown RBP15.4■□□□□ 0.06
HMGB3-204ENST00000448905 USP26Q9BXU7 913 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 LCTP09848 1927 aa15.4■□□□□ 0.06
HMGB3-204ENST00000448905 SCN5AQ14524 2016 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 C17orf102A2RUQ5 167 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 H3BRB1 525 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 LGR5O75473 907 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 ZNF286BP0CG31 522 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 THPOP40225 353 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 NEDD9Q14511 834 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 CATIPQ7Z7H3 387 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 TUT1Q9H6E5 874 aaKnown RBP15.39■□□□□ 0.05
HMGB3-204ENST00000448905 RIOX1Q9H6W3 641 aa15.39■□□□□ 0.05
HMGB3-204ENST00000448905 CHD7Q9P2D1 2997 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 EPOPA6NHQ4 379 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 OPLAHO14841 1288 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 RGS20O76081 388 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 HOXD8P13378 290 aaPredicted RBP15.38■□□□□ 0.05
HMGB3-204ENST00000448905 KCNQ1P51787 676 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 ERVK-21P61565 698 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 DEFB103AP81534 67 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 WTAPQ15007 396 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 NCOA7Q8NI08 942 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 EXOC6Q8TAG9 804 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 CUL5Q93034 780 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 ATP6V0A1Q93050 837 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 PIGSQ96S52 555 aa15.38■□□□□ 0.05
HMGB3-204ENST00000448905 SORBS3O60504 671 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 PPP1R11O60927 126 aaPredicted RBP15.37■□□□□ 0.05
HMGB3-204ENST00000448905 ZNF200P98182 395 aaPredicted RBP15.37■□□□□ 0.05
HMGB3-204ENST00000448905 GRM4Q14833 912 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 TRIM71Q2Q1W2 868 aaKnown RBP15.37■□□□□ 0.05
HMGB3-204ENST00000448905 KRT40Q6A162 431 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 FAM117BQ6P1L5 589 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 CYB5R4Q7L1T6 521 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 SERINC5Q86VE9 423 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 SEPT8Q92599 483 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 C16orf70Q9BSU1 422 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 SUGCTQ9HAC7 445 aa15.37■□□□□ 0.05
HMGB3-204ENST00000448905 LCHNA4D1U4 455 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 CAND2O75155 1236 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 ARHGEF15O94989 841 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 UBA1P22314 1058 aaKnown RBP15.36■□□□□ 0.05
HMGB3-204ENST00000448905 KIF5BP33176 963 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 SP2Q02086 613 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 PTPROQ16827 1216 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 XRRA1Q6P2D8 792 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 TMCO2Q7Z6W1 182 aaPredicted RBP15.36■□□□□ 0.05
HMGB3-204ENST00000448905 TMTC2Q8N394 836 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 GIMAP8Q8ND71 665 aaPredicted RBP15.36■□□□□ 0.05
HMGB3-204ENST00000448905 DBF4BQ8NFT6 615 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 ZNF215Q9UL58 517 aaPredicted RBP15.36■□□□□ 0.05
HMGB3-204ENST00000448905 MTUS1Q9ULD2 1270 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 MUC3AQ02505 3323 aa15.36■□□□□ 0.05
HMGB3-204ENST00000448905 LINC01553A4QN01 128 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 SPATA31C2B4DYI2 1134 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 FIBPO43427 364 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 LPXNO60711 386 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 CYP21A2P08686 494 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 ICAM3P32942 547 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 METTL7BQ6UX53 244 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 NLRX1Q86UT6 975 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 MYOCDQ8IZQ8 938 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 CTCFLQ8NI51 663 aaPredicted RBP15.35■□□□□ 0.05
HMGB3-204ENST00000448905 SMARCC2Q8TAQ2 1214 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 RRP36Q96EU6 259 aaKnown RBP15.35■□□□□ 0.05
HMGB3-204ENST00000448905 YTHDC1Q96MU7 727 aaKnown RBP15.35■□□□□ 0.05
HMGB3-204ENST00000448905 SAMD11Q96NU1 681 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 LZTS2Q9BRK4 669 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 RNPEPQ9H4A4 650 aa15.35■□□□□ 0.05
HMGB3-204ENST00000448905 TTC28Q96AY4 2481 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 E7EWF7 191 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 LGALS2P05162 132 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 SMIM10L2AP0DMW4 78 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 SMIM10L2BP0DMW5 78 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 SMARCA1P28370 1054 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 GNAQP50148 359 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 TROAPQ12815 778 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms