RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PBX2P40425 430 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 KCNJ6P48051 423 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 TROAPQ12815 778 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 PTK7Q13308 1070 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 NEDD9Q14511 834 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 PGM5Q15124 567 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 AAK1Q2M2I8 961 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 TJAP1Q5JTD0 557 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 MYSM1Q5VVJ2 828 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 PPP2R2DQ66LE6 453 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 CYB5R4Q7L1T6 521 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 DEFB128Q7Z7B8 93 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 HOMER1Q86YM7 354 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 TEX2Q8IWB9 1127 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 STAG2Q8N3U4 1231 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 IL27Q8NEV9 243 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 COPS5Q92905 334 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 RRP36Q96EU6 259 aaKnown RBP8.18□□□□□ -1.1
VPS41-208ENST00000448833 TMEM87BQ96K49 555 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 PRDM12Q9H4Q4 367 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 MLXIPQ9HAP2 919 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 CXXC1Q9P0U4 656 aaPredicted RBP8.18□□□□□ -1.1
VPS41-208ENST00000448833 GTF2IRD1Q9UHL9 959 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 UMODL1Q5DID0 1318 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 EMSYQ7Z589 1322 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 CUL9Q8IWT3 2517 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 CHD7Q9P2D1 2997 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 ABHD14A-ACY1A0A1B0GW23 586 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 CCDC69A6NI79 296 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 NOP56O00567 594 aaKnown RBP8.17□□□□□ -1.1
VPS41-208ENST00000448833 DDAH1O94760 285 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 F2P00734 622 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 POU3F3P20264 500 aaPredicted RBP8.17□□□□□ -1.1
VPS41-208ENST00000448833 IGFBP4P22692 258 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 PTGS1P23219 599 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 PDE4AP27815 886 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 PSEN2P49810 448 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 PTH1RQ03431 593 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 RBL2Q08999 1139 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 IKBKEQ14164 716 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 MFSD10Q14728 455 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 KIAA0753Q2KHM9 967 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 CELF3Q5SZQ8 465 aaKnown RBP8.17□□□□□ -1.1
VPS41-208ENST00000448833 RNF20Q5VTR2 975 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 SYNE3Q6ZMZ3 975 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 NFXL1Q6ZNB6 911 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 LRRC8DQ7L1W4 858 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 IGDCC4Q8TDY8 1250 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 CDHR1Q96JP9 859 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 SPATA33Q96N06 139 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 PIGSQ96S52 555 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 ZBED2Q9BTP6 218 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 SPZ1Q9BXG8 430 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 USP26Q9BXU7 913 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 NKX2-4Q9H2Z4 354 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 COL20A1Q9P218 1284 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 TET1Q8NFU7 2136 aa8.17□□□□□ -1.1
VPS41-208ENST00000448833 H3BRB1 525 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 HAS3O00219 553 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 PIK3CDO00329 1044 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 OPLAHO14841 1288 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 FIBPO43427 364 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 CAND2O75155 1236 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 GGPS1O95749 300 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 CKBP12277 381 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 HOXD8P13378 290 aaPredicted RBP8.16□□□□□ -1.1
VPS41-208ENST00000448833 HOXA13P31271 388 aaPredicted RBP8.16□□□□□ -1.1
VPS41-208ENST00000448833 ICAM3P32942 547 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 LIFRP42702 1097 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 MRPS5P82675 430 aaKnown RBP8.16□□□□□ -1.1
VPS41-208ENST00000448833 GDF6Q6KF10 455 aaPredicted RBP8.16□□□□□ -1.1
VPS41-208ENST00000448833 CNKSR3Q6P9H4 555 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 NLRX1Q86UT6 975 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 FCHSD1Q86WN1 690 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 HERC6Q8IVU3 1022 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 SMARCC2Q8TAQ2 1214 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 KAT2BQ92831 832 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 TNPO1Q92973 898 aaKnown RBP8.16□□□□□ -1.1
VPS41-208ENST00000448833 SENP7Q9BQF6 1050 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 ALG1Q9BT22 464 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 TUT1Q9H6E5 874 aaKnown RBP8.16□□□□□ -1.1
VPS41-208ENST00000448833 EHMT1Q9H9B1 1298 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 LMCD1Q9NZU5 365 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 THEGQ9P2T0 379 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 HDAC6Q9UBN7 1215 aa8.16□□□□□ -1.1
VPS41-208ENST00000448833 ZNF215Q9UL58 517 aaPredicted RBP8.16□□□□□ -1.1
VPS41-208ENST00000448833 SPATA31C2B4DYI2 1134 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 MAFGO15525 162 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 PRC1O43663 620 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 TLL1O43897 1013 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 PPP1R11O60927 126 aaPredicted RBP8.15□□□□□ -1.1
VPS41-208ENST00000448833 CXCL10P02778 98 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 RPLP2P05387 115 aaKnown RBP8.15□□□□□ -1.1
VPS41-208ENST00000448833 RABGGTBP53611 331 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 HSDL1Q3SXM5 330 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 PCNX4Q63HM2 1172 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 METTL7BQ6UX53 244 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 RASEFQ8IZ41 740 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 ZNF654Q8IZM8 581 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 PPM1EQ8WY54 764 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms