RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 DAGLAQ9Y4D2 1042 aa18.2■□□□□ 0.5
CLCNKA-203ENST00000439316 USO1O60763 962 aaKnown RBP18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 HOXA7P31268 230 aaPredicted RBP18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 ITIH3Q06033 890 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 CCDC96Q2M329 555 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 GRIPAP1Q4V328 841 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 CEP95Q96GE4 821 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 IFIH1Q9BYX4 1025 aaKnown RBP18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 RIOX1Q9H6W3 641 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 FAM204AQ9H8W3 233 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 JADE2Q9NQC1 790 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 TMEM260Q9NX78 707 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 BIN2Q9UBW5 565 aaPredicted RBP18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 PCDHA13Q9Y5I0 950 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 CAPN6Q9Y6Q1 641 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 SRCAPQ6ZRS2 3230 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 PHACTR2O75167 634 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 TACC1O75410 805 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 FGFR1OPO95684 399 aaKnown RBP18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 PRLRP16471 622 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 TXKP42681 527 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 SCNN1DP51172 638 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 KIF11P52732 1056 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 C2orf54Q08AI8 447 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 CALCRLQ16602 461 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 STRIP1Q5VSL9 837 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 CCNI2Q6ZMN8 369 aaPredicted RBP18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 CREG2Q8IUH2 290 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 TEX11Q8IYF3 940 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 MMGT1Q8N4V1 131 aa18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 LARP4BQ92615 738 aaKnown RBP18.19■□□□□ 0.5
CLCNKA-203ENST00000439316 MYBL2P10244 700 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 RHBDL3P58872 404 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 LRRC63Q05C16 580 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 FOXR2Q6PJQ5 311 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 LRRC55Q6ZSA7 311 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 CCDC84Q86UT8 332 aaPredicted RBP18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 SMCR8Q8TEV9 937 aaPredicted RBP18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 RUBCNQ92622 972 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 TRERF1Q96PN7 1200 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 SGIP1Q9BQI5 828 aa18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 ZNF646O15015 1829 aaPredicted RBP18.18■□□□□ 0.5
CLCNKA-203ENST00000439316 PLIN4Q96Q06 1357 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 ADAMTSL1Q8N6G6 1762 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 USP17L5A8MUK1 530 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 SLC37A4O43826 429 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 EDIL3O43854 480 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 PLCG2P16885 1265 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 EIF4A3P38919 411 aaKnown RBP18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 EHHADHQ08426 723 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 TMEM266Q2M3C6 531 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 DACT2Q5SW24 774 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 RAD54LQ92698 747 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 PSMD1Q99460 953 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 SELENOOQ9BVL4 669 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 MLXIPQ9HAP2 919 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 VAT1LQ9HCJ6 419 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 FAM207AQ9NSI2 230 aaPredicted RBP18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 BRCA1P38398 1863 aaKnown RBP18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 ZMYND10O75800 440 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 SLC20A2Q08357 652 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 TMEM119Q4V9L6 283 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 KIAA0825Q8IV33 1275 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 AFAP1L1Q8TED9 768 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 AENQ8WTP8 325 aaKnown RBP18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 BAP1Q92560 729 aa18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 ZNF277Q9NRM2 450 aaPredicted RBP18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 FEZ2Q9UHY8 353 aaPredicted RBP18.17■□□□□ 0.5
CLCNKA-203ENST00000439316 FOCADQ5VW36 1801 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 LRRC53A6NM62 1247 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 YDJCA8MPS7 323 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 PDHBP11177 359 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 ADCY7P51828 1080 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 GSPT2Q8IYD1 628 aaKnown RBP18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 CDK5RAP3Q96JB5 506 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 UBA5Q9GZZ9 404 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 TMEM51Q9NW97 253 aa18.16■□□□□ 0.5
CLCNKA-203ENST00000439316 PJA2O43164 708 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 MOCS3O95396 460 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 TDP2O95551 362 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 PTGER2P43116 358 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 PDIA5Q14554 519 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 DALRD3Q5D0E6 543 aaKnown RBP18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 CCDC70Q6NSX1 233 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 DYMQ7RTS9 669 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 SRLQ86TD4 932 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 RAB34Q9BZG1 259 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 EDEM3Q9BZQ6 932 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 MMRN2Q9H8L6 949 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 FKBP1AP62942 108 aaKnown RBP18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 PSMD2Q13200 908 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 ASTE1Q2TB18 679 aaPredicted RBP18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 PDXDC1Q6P996 788 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 GOLGA6L1Q8N7Z2 621 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 TEKT1Q969V4 418 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 ALS2CR12Q96Q35 445 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 CRACR2AQ9BSW2 395 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 LRRC27Q9C0I9 530 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 DEF6Q9H4E7 631 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 RIC8AQ9NPQ8 531 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms