RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 GOLGA8HP0CJ92 632 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 HOXB1P14653 301 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 IL32P24001 234 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 TKTP29401 623 aaKnown RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 SERPINB6P35237 376 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 ELF3P78545 371 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 RUNX1T1Q06455 604 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 LSAMPQ13449 338 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 NONOQ15233 471 aaKnown RBP eCLIP7.09□□□□□ -1.27
MCF2-205ENST00000437564 TMEM259Q4ZIN3 620 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 NAALADL2Q58DX5 795 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 C10orf62Q5T681 223 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 TCERG1LQ5VWI1 586 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 SIGIRRQ6IA17 410 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 CORO6Q6QEF8 472 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 RUFY3Q7L099 469 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 HOMER1Q86YM7 354 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 DZIP1LQ8IYY4 767 aaKnown RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 LINS1Q8NG48 757 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 PEX13Q92968 403 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 MARVELD3Q96A59 401 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 LENG1Q96BZ8 264 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 HAUS1Q96CS2 278 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 NLRP3Q96P20 1036 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 SPZ1Q9BXG8 430 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 NUF2Q9BZD4 464 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 FHDC1Q9C0D6 1143 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 KLHL4Q9C0H6 718 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 B3GNT4Q9C0J1 378 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 OCEL1Q9H607 264 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 PIDD1Q9HB75 910 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 CD93Q9NPY3 652 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 PIH1D3Q9NQM4 214 aaKnown RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.09□□□□□ -1.27
MCF2-205ENST00000437564 AIPL1Q9NZN9 384 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 GIT1Q9Y2X7 761 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 GPC6Q9Y625 555 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 MSH6P52701 1360 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 MAP3K6O95382 1288 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 ZFYP08048 801 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 GLI1P08151 1106 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 SFTPCP11686 197 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 GYS1P13807 737 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 ATF7P17544 494 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 ANXA13P27216 316 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 GSTT1P30711 240 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 HSD17B2P37059 387 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 STAT3P40763 770 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 EPS15P42566 896 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 GNGT1P63211 74 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 GBE1Q04446 702 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 TBL3Q12788 808 aaKnown RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 ITGB3BPQ13352 177 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 PRKG1Q13976 671 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 MAPRE2Q15555 327 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 IFI16Q16666 785 aaKnown RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 P3H1Q32P28 736 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 ZMYM1Q5SVZ6 1142 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 SYDE2Q5VT97 1194 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 ALS2CLQ60I27 953 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 DBX2Q6ZNG2 339 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 RASGRP2Q7LDG7 609 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 USP48Q86UV5 1035 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 MTMR14Q8NCE2 650 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 PTCD2Q8WV60 388 aaKnown RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 ATL1Q8WXF7 558 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 EFHD2Q96C19 240 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 TRPV6Q9H1D0 765 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 SMARCAD1Q9H4L7 1026 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 GDPD2Q9HCC8 539 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 XAB2Q9HCS7 855 aaKnown RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 POLMQ9NP87 494 aaPredicted RBP7.09□□□□□ -1.27
MCF2-205ENST00000437564 CFL2Q9Y281 166 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 LRRC42Q9Y546 428 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 CD2APQ9Y5K6 639 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 SNX9Q9Y5X1 595 aa7.09□□□□□ -1.27
MCF2-205ENST00000437564 A0A0J9YVX5 310 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CLRN2A0PK11 232 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 HNRNPCL2B2RXH8 293 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 RASA4BC9J798 803 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 AKR1B15C9JRZ8 316 aaPredicted RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 CASQ2O14958 399 aaPredicted RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 HNRNPCL1O60812 293 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 OLFM2O95897 454 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 GSTA1P08263 222 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 GZMAP12544 262 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 PRKAR1BP31321 381 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CHKAP35790 457 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 SIM2Q14190 667 aaPredicted RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 SF3B3Q15393 1217 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 PLEKHG6Q3KR16 790 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 BMP2KLQ5H9B9 411 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 ARMC4Q5T2S8 1044 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 PPP2R2DQ66LE6 453 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 OTUD7BQ6GQQ9 843 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 WDR93Q6P2C0 686 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 NEK5Q6P3R8 708 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 TTC23LQ6PF05 361 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 SND1Q7KZF4 910 aaKnown RBP eCLIP7.08□□□□□ -1.28
MCF2-205ENST00000437564 CHD1LQ86WJ1 897 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms