RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 TAF1DQ9H5J8 278 aaPredicted RBP23.65■■□□□ 1.38
PTPRF-207ENST00000436724 ZNF214Q9UL59 606 aaPredicted RBP23.65■■□□□ 1.38
PTPRF-207ENST00000436724 UQCRHLA0A096LP55 91 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 SERPINC1P01008 464 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 UQCRHP07919 91 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 ARP10275 920 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 ZNF18P17022 549 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 TMEM132BQ14DG7 1078 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 HYIQ5T013 277 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 SNRNP48Q6IEG0 339 aaKnown RBP23.64■■□□□ 1.38
PTPRF-207ENST00000436724 NSMFQ6X4W1 530 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 ZC3H15Q8WU90 426 aaKnown RBP23.64■■□□□ 1.38
PTPRF-207ENST00000436724 HPS3Q969F9 1004 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 SPTLC3Q9NUV7 552 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 ADAMTS5Q9UNA0 930 aa23.64■■□□□ 1.38
PTPRF-207ENST00000436724 POTEFA5A3E0 1075 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 POTEIP0CG38 1075 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 IREB2P48200 963 aaKnown RBP23.64■■□□□ 1.37
PTPRF-207ENST00000436724 TTLL12Q14166 644 aaPredicted RBP23.64■■□□□ 1.37
PTPRF-207ENST00000436724 SH3D19Q5HYK7 790 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 POTEGQ6S5H5 508 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 POTEEQ6S8J3 1075 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 CATSPER3Q86XQ3 398 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 OTUD5Q96G74 571 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 TAAR1Q96RJ0 339 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 RNF146Q9NTX7 359 aa23.64■■□□□ 1.37
PTPRF-207ENST00000436724 PTPRFP10586 1907 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 EML1O00423 815 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 IRF6O14896 467 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 TPM3P06753 285 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 FDX1P10109 184 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 UBASH3AP57075 661 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 GHRHRQ02643 423 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 PDE4DQ08499 809 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 PTPN21Q16825 1174 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 CT47A1Q5JQC4 288 aaPredicted RBP23.63■■□□□ 1.37
PTPRF-207ENST00000436724 NT5C3AQ9H0P0 336 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 RPTORQ8N122 1335 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 KDM3AQ9Y4C1 1321 aa23.63■■□□□ 1.37
PTPRF-207ENST00000436724 SPDYE16A6NNV3 312 aaPredicted RBP23.62■■□□□ 1.37
PTPRF-207ENST00000436724 MEIS1O00470 390 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 FCER1AP12319 257 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 ITGB5P18084 799 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 SPATA1Q5VX52 437 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 FILIP1Q7Z7B0 1213 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 GIMAP8Q8ND71 665 aaPredicted RBP23.62■■□□□ 1.37
PTPRF-207ENST00000436724 RBM46Q8TBY0 533 aaKnown RBP23.62■■□□□ 1.37
PTPRF-207ENST00000436724 PEX10O60683 326 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 SSBP05455 408 aaKnown RBP eCLIP23.62■■□□□ 1.37
PTPRF-207ENST00000436724 POTEJP0CG39 1038 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 SPATA31C1P0DKV0 1188 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 CDK11BP21127 795 aaKnown RBP23.62■■□□□ 1.37
PTPRF-207ENST00000436724 CYP4A11Q02928 519 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 STK4Q13043 487 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 LRCH2Q5VUJ6 765 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 RNF207Q6ZRF8 634 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 KIAA1524Q8TCG1 905 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 NELFBQ8WX92 580 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 DDX12PQ92771 950 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 EXOC1Q9NV70 894 aa23.62■■□□□ 1.37
PTPRF-207ENST00000436724 CHMP2AO43633 222 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 EIF2AK2P19525 551 aaKnown RBP23.61■■□□□ 1.37
PTPRF-207ENST00000436724 NF2P35240 595 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 PAK1Q13153 545 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 ARID5BQ14865 1188 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 HAUS3Q68CZ6 603 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 ADSSL1Q8N142 457 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 PYCARDQ9ULZ3 195 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 GRIN3BO60391 1043 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 PSMD10O75832 226 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 PSMC6P62333 389 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 PLS1Q14651 629 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 OTOP1Q7RTM1 612 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 SLC5A5Q92911 643 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 MXRA8Q9BRK3 442 aa23.61■■□□□ 1.37
PTPRF-207ENST00000436724 RBBP6Q7Z6E9 1792 aaKnown RBP23.61■■□□□ 1.37
PTPRF-207ENST00000436724 TRIM49BA6NDI0 452 aa23.6■■□□□ 1.37
PTPRF-207ENST00000436724 PMS1P54277 932 aaKnown RBP23.6■■□□□ 1.37
PTPRF-207ENST00000436724 MRPS9P82933 396 aaKnown RBP23.6■■□□□ 1.37
PTPRF-207ENST00000436724 BAATQ14032 418 aaPredicted RBP23.6■■□□□ 1.37
PTPRF-207ENST00000436724 ANKRD13AQ8IZ07 590 aa23.6■■□□□ 1.37
PTPRF-207ENST00000436724 ZNF577Q9BSK1 485 aa23.6■■□□□ 1.37
PTPRF-207ENST00000436724 WDR11Q9BZH6 1224 aa23.6■■□□□ 1.37
PTPRF-207ENST00000436724 RGL1Q9NZL6 768 aa23.6■■□□□ 1.37
PTPRF-207ENST00000436724 PKD2L1Q9P0L9 805 aa23.6■■□□□ 1.37
PTPRF-207ENST00000436724 RWDD2AQ9UIY3 292 aa23.6■■□□□ 1.37
PTPRF-207ENST00000436724 ZC3H4Q9UPT8 1303 aaKnown RBP23.6■■□□□ 1.37
PTPRF-207ENST00000436724 IDEP14735 1019 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 RPA1P27694 616 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 LRMPQ12912 555 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 ERMNQ8TAM6 284 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 INTS13Q9NVM9 706 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 HOXC10Q9NYD6 342 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 PLA2G4BP0C869 781 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 DNTTIP2Q5QJE6 756 aaKnown RBP23.59■■□□□ 1.37
PTPRF-207ENST00000436724 GADL1Q6ZQY3 521 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 RMDN3Q96TC7 470 aa23.59■■□□□ 1.37
PTPRF-207ENST00000436724 EIF2AK1Q9BQI3 630 aaKnown RBP23.59■■□□□ 1.37
PTPRF-207ENST00000436724 GAS7O60861 476 aa23.58■■□□□ 1.37
PTPRF-207ENST00000436724 OAZ1P54368 228 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms