RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 PLIN2Q99541 437 aa16.8■□□□□ 0.28
C9orf3-204ENST00000424143 NAP1L4Q99733 375 aaKnown RBP16.8■□□□□ 0.28
C9orf3-204ENST00000424143 EPN3Q9H201 632 aa16.8■□□□□ 0.28
C9orf3-204ENST00000424143 SLC39A2Q9NP94 309 aa16.8■□□□□ 0.28
C9orf3-204ENST00000424143 FAM207AQ9NSI2 230 aaPredicted RBP16.8■□□□□ 0.28
C9orf3-204ENST00000424143 RBM12Q9NTZ6 932 aaKnown RBP16.8■□□□□ 0.28
C9orf3-204ENST00000424143 TNNC1P63316 161 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 CUL1Q13616 776 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 SLC18A3Q16572 532 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 CALCRLQ16602 461 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 IFI16Q16666 785 aaKnown RBP16.79■□□□□ 0.28
C9orf3-204ENST00000424143 PPP4R3CPQ6ZMV5 832 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 C16orf86Q6ZW13 317 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 MYOCDQ8IZQ8 938 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 CNPY4Q8N129 248 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 ARFGAP2Q8N6H7 521 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 TBCKQ8TEA7 893 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 PBKQ96KB5 322 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 CALR3Q96L12 384 aaKnown RBP16.79■□□□□ 0.28
C9orf3-204ENST00000424143 GDAP1L1Q96MZ0 367 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 SEC63Q9UGP8 760 aaKnown RBP16.79■□□□□ 0.28
C9orf3-204ENST00000424143 SALL4Q9UJQ4 1053 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 LEMD3Q9Y2U8 911 aa16.79■□□□□ 0.28
C9orf3-204ENST00000424143 BZW2Q9Y6E2 419 aaKnown RBP16.79■□□□□ 0.28
C9orf3-204ENST00000424143 DDX60LQ5H9U9 1706 aaKnown RBP16.79■□□□□ 0.28
C9orf3-204ENST00000424143 COL16A1Q07092 1604 aaPredicted RBP16.79■□□□□ 0.28
C9orf3-204ENST00000424143 PLIN4Q96Q06 1357 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 NOL4O94818 638 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 LDHBP07195 334 aaKnown RBP16.78■□□□□ 0.28
C9orf3-204ENST00000424143 INPP5BP32019 993 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 PLCB4Q15147 1175 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 MCTP2Q6DN12 878 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 RPAINQ86UA6 219 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 CDK5RAP3Q96JB5 506 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 NLRP3Q96P20 1036 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 PLCB1Q9NQ66 1216 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 A1CFQ9NQ94 594 aaKnown RBP16.78■□□□□ 0.28
C9orf3-204ENST00000424143 TAF1P21675 1872 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 CNTNAP4Q9C0A0 1308 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 USP17L3A6NCW0 530 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 USP17L4A6NCW7 530 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 WTIPA6NIX2 430 aaPredicted RBP16.78■□□□□ 0.28
C9orf3-204ENST00000424143 RASSF7Q02833 373 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 FAM83BQ5T0W9 1011 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 KRT79Q5XKE5 535 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 USP17L1Q7RTZ2 530 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 TRIM59Q8IWR1 403 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 MICALL1Q8N3F8 863 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 PRPF38AQ8NAV1 312 aaKnown RBP16.78■□□□□ 0.28
C9orf3-204ENST00000424143 ISCUQ9H1K1 167 aa16.78■□□□□ 0.28
C9orf3-204ENST00000424143 SNED1Q8TER0 1413 aa16.77■□□□□ 0.28
C9orf3-204ENST00000424143 MEFVO15553 781 aaPredicted RBP16.77■□□□□ 0.27
C9orf3-204ENST00000424143 GLI1P08151 1106 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 GCFC2P16383 781 aaKnown RBP16.77■□□□□ 0.27
C9orf3-204ENST00000424143 PLCG2P16885 1265 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 SLC1A4P43007 532 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 SLC7A5Q01650 507 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 PIK3R5Q8WYR1 880 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 DNAJC19Q96DA6 116 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 DYNLL2Q96FJ2 89 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 ATP6V1G3Q96LB4 118 aa16.77■□□□□ 0.27
C9orf3-204ENST00000424143 KIF13BQ9NQT8 1826 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 KDM3AQ9Y4C1 1321 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 ZNF233A6NK53 670 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 NDUFAB1O14561 156 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 TLR2O60603 784 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 HEXIM1O94992 359 aaKnown RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 KLRK1P26718 216 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 FNTAP49354 379 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 GFPT1Q06210 699 aaPredicted RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 EDRF1Q3B7T1 1238 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 SPDYCQ5MJ68 293 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 RC3H1Q5TC82 1133 aaKnown RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 USP38Q8NB14 1042 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 ACTRT1Q8TDG2 376 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 SH3RF3Q8TEJ3 882 aaPredicted RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 SCFD2Q8WU76 684 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 FAM163AQ96GL9 167 aaPredicted RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 TACO1Q9BSH4 297 aaKnown RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 NT5C3AQ9H0P0 336 aa16.76■□□□□ 0.27
C9orf3-204ENST00000424143 BMP2KQ9NSY1 1161 aaPredicted RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 GEMIN8Q9NWZ8 242 aaKnown RBP16.76■□□□□ 0.27
C9orf3-204ENST00000424143 CDK5RAP2Q96SN8 1893 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 NKRFO15226 690 aaKnown RBP eCLIP16.75■□□□□ 0.279e-10■■■■■ 29
C9orf3-204ENST00000424143 PPP1R37O75864 691 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 KIAA0754O94854 1291 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 LSP1P33241 339 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 CARSP49589 748 aaKnown RBP16.75■□□□□ 0.27
C9orf3-204ENST00000424143 DDR1Q08345 913 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 DDB1Q16531 1140 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 ASPRV1Q53RT3 343 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 TAX1BP1Q86VP1 789 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 DDX12PQ92771 950 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 LRRC45Q96CN5 670 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 CCDC43Q96MW1 224 aaKnown RBP16.75■□□□□ 0.27
C9orf3-204ENST00000424143 TAF1DQ9H5J8 278 aaPredicted RBP16.75■□□□□ 0.27
C9orf3-204ENST00000424143 EPB41L5Q9HCM4 733 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 SWAP70Q9UH65 585 aa16.75■□□□□ 0.27
C9orf3-204ENST00000424143 FBXL5Q9UKA1 691 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms