RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 NACAP1Q9BZK3 213 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 DCTN2Q13561 401 aaKnown RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 PATL1Q86TB9 770 aaKnown RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 HEATR4Q86WZ0 1026 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 ANLNQ9NQW6 1124 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 SART1O43290 800 aaKnown RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 KCNA1Q09470 495 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 ZNF530Q6P9A1 599 aaPredicted RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 MAELQ96JY0 434 aaKnown RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 GIGYF1O75420 1035 aaPredicted RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 SLC4A2P04920 1241 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 KRT10P13645 584 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 BDNFP23560 247 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 ETNK1Q9HBU6 452 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 SLC2A7Q6PXP3 512 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 TRPM8Q7Z2W7 1104 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 RAVER1Q8IY67 606 aaKnown RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 PLIN2Q99541 437 aa3.71□□□□□ -1.82
SYNE1-212ENST00000423061 EPN1Q9Y6I3 576 aaPredicted RBP3.71□□□□□ -1.82
SYNE1-212ENST00000423061 PDE2AO00408 941 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TTMPQ5BVD1 217 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 MLXIPQ9HAP2 919 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PDP2Q9P2J9 529 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CASQ2O14958 399 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PANX2Q96RD6 677 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 LRRC1Q9BTT6 524 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 AOX1Q06278 1338 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NPM3O75607 178 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 C16orf72Q14CZ0 275 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RNF19BQ6ZMZ0 732 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NBPF15Q8N660 670 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NEK1Q96PY6 1258 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CYTH2Q99418 400 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TRIM39Q9HCM9 518 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ITGB1BP2Q9UKP3 347 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 LARGE1O95461 756 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TTC39AQ5SRH9 613 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RRAGBQ5VZM2 374 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ADCY3O60266 1144 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 MDM2Q00987 491 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 KYNUQ16719 465 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 SDR16C5Q8N3Y7 309 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CFAP61Q8NHU2 1237 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 FERMT2Q96AC1 680 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 DNAJC5Q9H3Z4 198 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RCOR1Q9UKL0 485 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ADCY10Q96PN6 1610 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 MAGEA13PA6NCF6 341 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 U2AF1L4Q8WU68 220 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NOX5Q96PH1 765 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 MRPL9Q9BYD2 267 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 BCAP29Q9UHQ4 241 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TRIM17Q9Y577 477 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TET3O43151 1660 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PER1O15534 1290 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 POSTNQ15063 836 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TYW1BQ6NUM6 668 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NME8Q8N427 588 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RAB17Q9H0T7 212 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PLEKHA5Q9HAU0 1116 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TARSL2A2RTX5 802 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ASCC2Q9H1I8 757 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RNPEPQ9H4A4 650 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 FANCAO15360 1455 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PTK2Q05397 1052 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 SMYD5Q6GMV2 418 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 LRRC45Q96CN5 670 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 STMN4Q9H169 189 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 SYNPO2Q9UMS6 1093 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ZNF510Q9Y2H8 683 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PDE1BQ01064 536 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CFAP70Q5T0N1 1121 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 FCHSD1Q86WN1 690 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 APLFQ8IW19 511 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 SAMD3Q8N6K7 520 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 DDHD1Q8NEL9 900 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ARMC7Q9H6L4 198 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PNMA3Q9UL41 463 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ALDH1L1O75891 902 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NPTXRO95502 500 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 KRT18P05783 430 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TFPTP0C1Z6 253 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NAA20P61599 178 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ARHGAP42A6NI28 874 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NCK2O43639 380 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ATP6V1B1P15313 513 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 GNAQP50148 359 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 IQGAP3Q86VI3 1631 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 WAPLQ7Z5K2 1190 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 MAP3K19Q56UN5 1328 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 hCG_1642624A0A1W2PR95 340 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 DNAJC1Q96KC8 554 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 NEUROD6Q96NK8 337 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 KRT83P78385 493 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 KIF5AQ12840 1032 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC153Q494R4 210 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 FAM228AQ86W67 206 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 SCG3Q8WXD2 468 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RAPGEF4Q8WZA2 1011 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms