RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 RRAGAQ7L523 313 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 TMC4Q7Z404 712 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 SLF2Q8IX21 1173 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 SLC44A5Q8NCS7 719 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 CAVIN3Q969G5 261 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 MS4A14Q96JA4 679 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 PIGSQ96S52 555 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 FAM107BQ9H098 131 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 LUC7LQ9NQ29 371 aaKnown RBP10.83□□□□□ -0.68
CD44-206ENST00000415148 BIN2Q9UBW5 565 aaPredicted RBP10.83□□□□□ -0.68
CD44-206ENST00000415148 DDX60LQ5H9U9 1706 aaKnown RBP10.82□□□□□ -0.68
CD44-206ENST00000415148 LRRC53A6NM62 1247 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 GNA14O95837 355 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 GTF2A1P52655 376 aaPredicted RBP10.82□□□□□ -0.68
CD44-206ENST00000415148 PPFIA1Q13136 1202 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 GRAPQ13588 217 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 TRADDQ15628 312 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 TMEM119Q4V9L6 283 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 ASPRV1Q53RT3 343 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 CCDC181Q5TID7 509 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 KRT79Q5XKE5 535 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 FBXW10Q5XX13 1052 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 PPP4R3AQ6IN85 833 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 PPP1R18Q6NYC8 613 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 USP17L2Q6R6M4 530 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 LRRC55Q6ZSA7 311 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 TADA2BQ86TJ2 420 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 SLC51AQ86UW1 340 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 MAPKAPK5Q8IW41 473 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 GRAPLQ8TC17 118 aaPredicted RBP10.82□□□□□ -0.68
CD44-206ENST00000415148 NOX5Q96PH1 765 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 FAM207AQ9NSI2 230 aaPredicted RBP10.82□□□□□ -0.68
CD44-206ENST00000415148 ANKIB1Q9P2G1 1089 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 TNRC6CQ9HCJ0 1690 aaKnown RBP10.82□□□□□ -0.68
CD44-206ENST00000415148 ADCY7P51828 1080 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 GNGT1P63211 74 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 FKBP3Q00688 224 aaKnown RBP10.82□□□□□ -0.68
CD44-206ENST00000415148 DIXDC1Q155Q3 683 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 HAUS3Q68CZ6 603 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 KCTD16Q68DU8 428 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 CACNA2D4Q7Z3S7 1137 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 PPM1EQ8WY54 764 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 CEP63Q96MT8 703 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 CEP72Q9P209 647 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 STIM2Q9P246 746 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 FAM169AQ9Y6X4 670 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 CDK5RAP2Q96SN8 1893 aa10.82□□□□□ -0.68
CD44-206ENST00000415148 PLIN4Q96Q06 1357 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 ESYT3A0FGR9 886 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 SERPING1P05155 500 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 FAM153BP0C7A2 387 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 BTDP43251 543 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 MARSP56192 900 aaKnown RBP10.81□□□□□ -0.68
CD44-206ENST00000415148 PDCLQ13371 301 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 FAM153CQ494X1 144 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 SLC9C1Q4G0N8 1177 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 CFAP221Q4G0U5 840 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 MYOCDQ8IZQ8 938 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 BCAS4Q8TDM0 211 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 DDX12PQ92771 950 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 CEP95Q96GE4 821 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 NAP1L4Q99733 375 aaKnown RBP10.81□□□□□ -0.68
CD44-206ENST00000415148 FAM153AQ9UHL3 310 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 SAP30BPQ9UHR5 308 aaKnown RBP10.81□□□□□ -0.68
CD44-206ENST00000415148 COL4A3BPQ9Y5P4 624 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 GRID2IPA4D2P6 1211 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 CPP00450 1065 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 ATP1A2P50993 1020 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 DNA2P51530 1060 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 APBA1Q02410 837 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 KCNMA1Q12791 1236 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 ZCWPW2Q504Y3 356 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 HYIQ5T013 277 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 KLHDC7AQ5VTJ3 777 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 HGSNATQ68CP4 663 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 KCNV1Q6PIU1 500 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 DYMQ7RTS9 669 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 GLIS3Q8NEA6 775 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 CAPS2Q9BXY5 557 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 VAT1LQ9HCJ6 419 aa10.81□□□□□ -0.68
CD44-206ENST00000415148 BMP2KQ9NSY1 1161 aaPredicted RBP10.81□□□□□ -0.68
CD44-206ENST00000415148 RBM12Q9NTZ6 932 aaKnown RBP10.81□□□□□ -0.68
CD44-206ENST00000415148 EIF3HO15372 352 aaKnown RBP eCLIP10.8□□□□□ -0.68
CD44-206ENST00000415148 BUB1O43683 1085 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 KRT14P02533 472 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 SNHG28P0DPA3 235 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 IL1R1P14778 569 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 GRIK5Q16478 980 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 SFMBT2Q5VUG0 894 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 IFT20Q8IY31 132 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 EFCAB13Q8IY85 973 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 TEX11Q8IYF3 940 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 SNX29Q8TEQ0 813 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 MTMR8Q96EF0 704 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 TLR10Q9BXR5 811 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 NT5C3AQ9H0P0 336 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 TMEM260Q9NX78 707 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 SRP68Q9UHB9 627 aaKnown RBP10.8□□□□□ -0.68
CD44-206ENST00000415148 KDM3AQ9Y4C1 1321 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 USP17L5A8MUK1 530 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms