RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 RASSF7Q02833 373 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 TRPC3Q13507 836 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 OTUD6AQ7L8S5 288 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 SLC35F6Q8N357 371 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 ZNF579Q8NAF0 562 aaKnown RBP12.3□□□□□ -0.44
PTPRF-204ENST00000412568 RMDN3Q96TC7 470 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 CUEDC2Q9H467 287 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 STK17AQ9UEE5 414 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 RWDD2AQ9UIY3 292 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 EXOC7Q9UPT5 735 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 GOLGA8IPA6NC78 632 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 GOLGA8JA6NMD2 632 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 HNRNPDLO14979 420 aaKnown RBP12.29□□□□□ -0.44
PTPRF-204ENST00000412568 HSF2BPO75031 334 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 POLGP54098 1239 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-204ENST00000412568 TUBB4BP68371 445 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 EXOC3L4Q17RC7 722 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 SUPT20HL1Q3ZLR7 823 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 POMGNT1Q8WZA1 660 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 ZNF668Q96K58 619 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-204ENST00000412568 FBXO28Q9NVF7 368 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 MTERF2Q49AM1 385 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 MICALL2Q8IY33 904 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 ZNRF3Q9ULT6 936 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 VEGFAP15692 232 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-204ENST00000412568 MARK3P27448 753 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 CXCR5P32302 372 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 LIG4P49917 911 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 NTRK3Q16288 839 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 TCP11X2Q5H9J9 407 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 GSTA5Q7RTV2 222 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 KRT26Q7Z3Y9 468 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 FUCA2Q9BTY2 467 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 TSGA10Q9BZW7 698 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 RABEP2Q9H5N1 569 aa12.29□□□□□ -0.44
PTPRF-204ENST00000412568 PEAK1Q9H792 1746 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 NCBP1Q09161 790 aaKnown RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 VWA3BQ502W6 1294 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 DCAF4Q8WV16 495 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 CNOT7Q9UIV1 285 aaKnown RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 SAR1BQ9Y6B6 198 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 DKC1O60832 514 aaKnown RBP eCLIP12.28□□□□□ -0.449e-7■■■■■ 35.8
PTPRF-204ENST00000412568 HMGCS2P54868 508 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 SEC23AQ15436 765 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 EARS2Q5JPH6 523 aaKnown RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 GBP6Q6ZN66 633 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 RNF207Q6ZRF8 634 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 SLC51AQ86UW1 340 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 MICALL1Q8N3F8 863 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 RTFDC1Q9BY42 306 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 NPHP3-ACAD11A0A0J9YXS1 232 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 DDTLA6NHG4 134 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 EFCAB8A8MWE9 144 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 hCG_1984214I3L0E3 225 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 ECE1P42892 770 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 TOB1P50616 345 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 VAV2P52735 878 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 GPR161Q8N6U8 529 aaKnown RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 ZNF713Q8N859 430 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-204ENST00000412568 NRXN3Q9Y4C0 1643 aa12.28□□□□□ -0.44
PTPRF-204ENST00000412568 STXBP3O00186 592 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 POLRMTO00411 1230 aaKnown RBP12.27□□□□□ -0.44
PTPRF-204ENST00000412568 ZMYND10O75800 440 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 TUBBP07437 444 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 EEF1GP26641 437 aaKnown RBP12.27□□□□□ -0.44
PTPRF-204ENST00000412568 MRPS25P82663 173 aaKnown RBP12.27□□□□□ -0.44
PTPRF-204ENST00000412568 NAA35Q5VZE5 725 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 SNRNP48Q6IEG0 339 aaKnown RBP12.27□□□□□ -0.44
PTPRF-204ENST00000412568 C8orf74Q6P047 294 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 SFR1Q86XK3 245 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 FAM133AQ8N9E0 248 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 ACER1Q8TDN7 264 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 SPZ1Q9BXG8 430 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 NDST4Q9H3R1 872 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 RNF181Q9P0P0 153 aa12.27□□□□□ -0.44
PTPRF-204ENST00000412568 IVLP07476 585 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 TUBB2AQ13885 445 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 MCTP2Q6DN12 878 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 PEX26Q7Z412 305 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 HOOK3Q86VS8 718 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 FAM186BQ8IYM0 893 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 NACC1Q96RE7 527 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 BPIFA3Q9BQP9 254 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 TUBB2BQ9BVA1 445 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 WDR11Q9BZH6 1224 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 JMJD4Q9H9V9 463 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 ZNF70Q9UC06 446 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-204ENST00000412568 PCDHAC2Q9Y5I4 1007 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 PPP4CP60510 307 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 KCTD2Q14681 263 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 DYDC2Q96IM9 177 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 PLVAPQ9BX97 442 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 TRIM6Q9C030 488 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-204ENST00000412568 MAD2L2Q9UI95 211 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 ANAPC4Q9UJX5 808 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 NFAT5O94916 1531 aa12.27□□□□□ -0.45
PTPRF-204ENST00000412568 BCRP11274 1271 aa12.26□□□□□ -0.45
PTPRF-204ENST00000412568 OSTNP61366 133 aa12.26□□□□□ -0.45
PTPRF-204ENST00000412568 DMP1Q13316 513 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-204ENST00000412568 MTF1Q14872 753 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms