RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 PIK3CDO00329 1044 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 CTGFP29279 349 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 TAF1CQ15572 869 aaPredicted RBP13.18□□□□□ -0.3
SKA3-203ENST00000400018 DPCR1Q3MIW9 517 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 CEP55Q53EZ4 464 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 PRAMEF19Q5SWL8 479 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 KRBA2Q6ZNG9 492 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 CABP7Q86V35 215 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 LUZP1Q86V48 1076 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 BANK1Q8NDB2 785 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 COPS5Q92905 334 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 PCDHA5Q9Y5H7 936 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 BMP6P22004 513 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 OSBPP22059 807 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 SEMA3FQ13275 785 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 MCM6Q14566 821 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 ANO6Q4KMQ2 910 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 MAEAQ7L5Y9 396 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 BBXQ8WY36 941 aaPredicted RBP13.18□□□□□ -0.3
SKA3-203ENST00000400018 LENG1Q96BZ8 264 aaPredicted RBP13.18□□□□□ -0.3
SKA3-203ENST00000400018 PNMA5Q96PV4 448 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 ZNF577Q9BSK1 485 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 FAM13BQ9NYF5 915 aa13.18□□□□□ -0.3
SKA3-203ENST00000400018 TBC1D8O95759 1140 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 AP3B2Q13367 1082 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 TKFCQ3LXA3 575 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 FBXO16Q8IX29 292 aaPredicted RBP13.17□□□□□ -0.3
SKA3-203ENST00000400018 SMC1BQ8NDV3 1235 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 FGD4Q96M96 766 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 KCNMB3Q9NPA1 279 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 KIAA1024Q9UPX6 916 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 LCTP09848 1927 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 TMEM88BA6NKF7 163 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 TOMM70O94826 608 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 TYRO3Q06418 890 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 GRB10Q13322 594 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 CRHR2Q13324 411 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 UNC45AQ9H3U1 944 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 SAMM50Q9Y512 469 aa13.17□□□□□ -0.3
SKA3-203ENST00000400018 ZSWIM8A7E2V4 1837 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 GOLGA6L3A6NEY3 463 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 STAT6P42226 847 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 SPIRE1Q08AE8 756 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 LY6KQ17RY6 165 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 LRCH2Q5VUJ6 765 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 PPP4R3AQ6IN85 833 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 LRSAM1Q6UWE0 723 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 GLIS3Q8NEA6 775 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 FERMT2Q96AC1 680 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 PAGE5Q96GU1 130 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 TBC1D7Q9P0N9 293 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 TLL2Q9Y6L7 1015 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 POTEB2H3BUK9 544 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 IPO5O00410 1097 aaKnown RBP13.16□□□□□ -0.3
SKA3-203ENST00000400018 MTMR1Q13613 665 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 E2F4Q16254 413 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 RIOX2Q8IUF8 465 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 TPH2Q8IWU9 490 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 TRMT44Q8IYL2 757 aaKnown RBP13.16□□□□□ -0.3
SKA3-203ENST00000400018 IGSF22Q8N9C0 903 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 ZBTB10Q96DT7 871 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 MXRA8Q9BRK3 442 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 DDX19AQ9NUU7 478 aaKnown RBP13.16□□□□□ -0.3
SKA3-203ENST00000400018 TRPM7Q96QT4 1865 aa13.16□□□□□ -0.3
SKA3-203ENST00000400018 LOC285556D6RIA3 1793 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 SFI1A8K8P3 1242 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 ARIH2O95376 493 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 CCT6AP40227 531 aaKnown RBP13.15□□□□□ -0.3
SKA3-203ENST00000400018 USP11P51784 963 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 PABPC4Q13310 644 aaKnown RBP eCLIP13.15□□□□□ -0.36e-8■□□□□ 9.5
SKA3-203ENST00000400018 CCL14Q16627 93 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 RRAGBQ5VZM2 374 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 KLHL10Q6JEL2 608 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 MCF2L2Q86YR7 1114 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 DYDC2Q96IM9 177 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 MMP19Q99542 508 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 FUCA2Q9BTY2 467 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 DISC1Q9NRI5 854 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 ESPNB1AK53 854 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 FOSP01100 380 aaPredicted RBP13.15□□□□□ -0.3
SKA3-203ENST00000400018 TPM2P07951 284 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 ADORA2AP29274 412 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 STX17P56962 302 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 CHMP4BP1P59074 171 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 MDM2Q00987 491 aaPredicted RBP13.15□□□□□ -0.3
SKA3-203ENST00000400018 UGCGQ16739 394 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 CATSPER3Q86XQ3 398 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 GPRC5AQ8NFJ5 357 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 BLOC1S4Q9NUP1 217 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 VAV3Q9UKW4 847 aa13.15□□□□□ -0.3
SKA3-203ENST00000400018 ZHX1Q9UKY1 873 aaPredicted RBP13.15□□□□□ -0.3
SKA3-203ENST00000400018 AP5Z1O43299 807 aa13.14□□□□□ -0.31
SKA3-203ENST00000400018 GAS7O60861 476 aa13.14□□□□□ -0.31
SKA3-203ENST00000400018 CCNE2O96020 404 aa13.14□□□□□ -0.31
SKA3-203ENST00000400018 MYCP01106 439 aaPredicted RBP13.14□□□□□ -0.31
SKA3-203ENST00000400018 SLC10A3P09131 477 aa13.14□□□□□ -0.31
SKA3-203ENST00000400018 UTP14CQ5TAP6 766 aaKnown RBP13.14□□□□□ -0.31
SKA3-203ENST00000400018 PDXDC2PQ6P474 469 aa13.14□□□□□ -0.31
SKA3-203ENST00000400018 CYFIP1Q7L576 1253 aa13.14□□□□□ -0.31
SKA3-203ENST00000400018 IFNL1Q8IU54 200 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 511.7 ms