RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 CDK5RAP3Q96JB5 506 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 DACT1Q9NYF0 836 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 PAPPA2Q9BXP8 1791 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 ZAP70P43403 619 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 PPM1FP49593 454 aaPredicted RBP9.04□□□□□ -0.96
LIMS1-203ENST00000393310 MTA1Q13330 715 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 BEND3Q5T5X7 828 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 SYDE2Q5VT97 1194 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 CNKSR3Q6P9H4 555 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 EEPD1Q7L9B9 569 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 OTOP3Q7RTS5 596 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 VPS37AQ8NEZ2 397 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 RTP3Q9BQQ7 232 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 GPCPD1Q9NPB8 672 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 MTMR10Q9NXD2 777 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 TREHO43280 583 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 KCNA5P22460 613 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 IFIT1BQ5T764 474 aaKnown RBP9.04□□□□□ -0.96
LIMS1-203ENST00000393310 CATSPERGQ6ZRH7 1159 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 NKD2Q969F2 451 aaPredicted RBP9.04□□□□□ -0.96
LIMS1-203ENST00000393310 RAD9AQ99638 391 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 MTUS1Q9ULD2 1270 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 G3BP2Q9UN86 482 aaKnown RBP9.04□□□□□ -0.96
LIMS1-203ENST00000393310 CDKL5O76039 1030 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 ALDH7A1P49419 539 aaKnown RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 SP4Q02446 784 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 TFDP1Q14186 410 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 TSR1Q2NL82 804 aaKnown RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 TNNI3KQ59H18 835 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 ZFPM1Q8IX07 1006 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 USP38Q8NB14 1042 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 NSUN3Q9H649 340 aaKnown RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 NYAP2Q9P242 653 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 CCDC39Q9UFE4 941 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 SYNPO2Q9UMS6 1093 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 Q9Y3F1 56 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 MRFAP1Q9Y605 127 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 TRAK2O60296 914 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 GCKP35557 465 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 PPP4CP60510 307 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 NUCB1Q02818 461 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 CACNB2Q08289 660 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 IQCEQ6IPM2 695 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 TATDN1Q6P1N9 297 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 UBE2Q1Q7Z7E8 422 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 CTNNBL1Q8WYA6 563 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 WASF1Q92558 559 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 PRKAG3Q9UGI9 489 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 AFG3L2Q9Y4W6 797 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 RSPH10B2B2RC85 870 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 FOSP01100 380 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 RSPH10BP0C881 870 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 LRRC41Q15345 812 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 ASPRV1Q53RT3 343 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 AMIGO3Q86WK7 504 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 ERMNQ8TAM6 284 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 APPBP2Q92624 585 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 MOV10L1Q9BXT6 1211 aaKnown RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 CXorf56Q9H5V9 222 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 SYNGAP1Q96PV0 1343 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 XYLBO75191 536 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 ZNF131P52739 623 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 NUBP1P53384 320 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 SH3D19Q5HYK7 790 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 FAM83BQ5T0W9 1011 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 CDCA3Q99618 268 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 CDV3Q9UKY7 258 aaKnown RBP9.03□□□□□ -0.96
LIMS1-203ENST00000393310 ABCA3Q99758 1704 aa9.03□□□□□ -0.96
LIMS1-203ENST00000393310 STAM2O75886 525 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 THPOP40225 353 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 CCDC83Q8IWF9 413 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 C17orf50Q8WW18 174 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 CASP10Q92851 521 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 ATP6V0A1Q93050 837 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 RAVER2Q9HCJ3 691 aaKnown RBP9.02□□□□□ -0.97
LIMS1-203ENST00000393310 RABL2BQ9UNT1 228 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 SATB2Q9UPW6 733 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 JRKLQ9Y4A0 524 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 TNKSO95271 1327 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 RNF113AO15541 343 aaKnown RBP9.02□□□□□ -0.97
LIMS1-203ENST00000393310 PSMA5P28066 241 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 PSEN1P49768 467 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 MAP7D1Q3KQU3 841 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 PTCRAQ6ISU1 281 aaPredicted RBP9.02□□□□□ -0.97
LIMS1-203ENST00000393310 GLB1LQ6UWU2 654 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 USP37Q86T82 979 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 ZIC5Q96T25 663 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 WDR11Q9BZH6 1224 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 DZANK1Q9NVP4 752 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 SMIM22K7EJ46 135 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 IFIT3O14879 490 aaKnown RBP9.02□□□□□ -0.97
LIMS1-203ENST00000393310 GPR182O15218 404 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 OFD1O75665 1012 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 PGK1P00558 417 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 VCAM1P19320 739 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 FXR1P51114 621 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMS1-203ENST00000393310 TFAP4Q01664 338 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 PAK2Q13177 524 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 KRT24Q2M2I5 525 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 ZNF365Q70YC5 407 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms