RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 LDHCP07864 332 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 SESN2P58004 480 aaPredicted RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 RASSF5Q8WWW0 418 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 EPB41L5Q9HCM4 733 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 ADAM30Q9UKF2 790 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 SMARCA5O60264 1052 aaPredicted RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 CTCFP49711 727 aaPredicted RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 MDM1Q8TC05 714 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 ATP8A1Q9Y2Q0 1164 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 CAMSAP2Q08AD1 1489 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 PGRMC1O00264 195 aaKnown RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 DDX5P17844 614 aaKnown RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 SERPINB8P50452 374 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 TMED2Q15363 201 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 KIF19Q2TAC6 998 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 NCLNQ969V3 563 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 AGBL1Q96MI9 1066 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 MTA3Q9BTC8 594 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 XPO4Q9C0E2 1151 aaKnown RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 ADNPQ9H2P0 1102 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 SUPT6HQ7KZ85 1726 aaKnown RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 MEFVO15553 781 aaPredicted RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 AGGF1Q8N302 714 aaeCLIP9.4□□□□□ -0.9
LIG3-202ENST00000378526 DNAJC9Q8WXX5 260 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 CMTM5Q96DZ9 223 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 CCDC28BQ9BUN5 200 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 TUFT1Q9NNX1 390 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 TOM1L1O75674 476 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 BAIAP3O94812 1187 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 CPP00450 1065 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 PMS2P54278 862 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 HIC1Q14526 733 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 DMC1Q14565 340 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 NELFBQ8WX92 580 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 NUTM2FA1L443 756 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 PODXLO00592 558 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 STAM2O75886 525 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 MYL6BP14649 208 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 SERPINH1P50454 418 aaKnown RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 CABP4P57796 275 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 PPARDQ03181 441 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 SGSM1Q2NKQ1 1148 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 CFAP70Q5T0N1 1121 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 NUTM2GQ5VZR2 741 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 RRAGAQ7L523 313 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 NARS2Q96I59 477 aaKnown RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 CADPSQ9ULU8 1353 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 CCT3P49368 545 aaKnown RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 PLIN5Q00G26 463 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 TRIP4Q15650 581 aaPredicted RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 PPP4R4Q6NUP7 873 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 RNASE11Q8TAA1 199 aaKnown RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 USP28Q96RU2 1077 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 ELAC2Q9BQ52 826 aaKnown RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 TRPC6Q9Y210 931 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 POTEFA5A3E0 1075 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 CAV1Q03135 178 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 EFTUD2Q15029 972 aaKnown RBP eCLIP9.4□□□□□ -0.93e-6■■■■□ 23.7
LIG3-202ENST00000378526 DNAL1Q4LDG9 190 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 ATP13A5Q4VNC0 1218 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 TCP11X2Q5H9J9 407 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 RETREG2Q8NC44 543 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 ATPIF1Q9UII2 106 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 USTQ9Y2C2 406 aa9.4□□□□□ -0.9
LIG3-202ENST00000378526 EPN1Q9Y6I3 576 aaPredicted RBP9.4□□□□□ -0.9
LIG3-202ENST00000378526 ARPC4P59998 168 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 YWHAGP61981 247 aaKnown RBP eCLIP9.4□□□□□ -0.91
LIG3-202ENST00000378526 KIF22Q14807 665 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 GDAP1Q8TB36 358 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 CCT7Q99832 543 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 FAM192AQ9GZU8 254 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 USP40Q9NVE5 1235 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 RABGEF1Q9UJ41 708 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 PRELID1Q9Y255 219 aa9.4□□□□□ -0.91
LIG3-202ENST00000378526 SAC3D1A6NKF1 404 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 PGM3O95394 542 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 TAC1P20366 129 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 FAM45BPQ6NSW5 357 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 FAM178BQ8IXR5 827 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 APOL4Q9BPW4 351 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 ETNK1Q9HBU6 452 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 KIF21BO75037 1637 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 SDSP20132 328 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 ARHGEF1Q92888 912 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 BHMTQ93088 406 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 PHACTR3Q96KR7 559 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 BTBD7Q9P203 1132 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 PPARGC1AQ9UBK2 798 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 MMRN1Q13201 1228 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 KRT72Q14CN4 511 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 ANO1Q5XXA6 986 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 EPM2AIP1Q7L775 607 aaPredicted RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 GPR141Q7Z602 305 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 KCNV2Q8TDN2 545 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 RNPEPQ9H4A4 650 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 SCN3BQ9NY72 215 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 STOML2Q9UJZ1 356 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 ADGRA3Q8IWK6 1321 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 POLR2BP30876 1174 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms