RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 EHMT1Q9H9B1 1298 aa19.33■□□□□ 0.68
HMGN4-201ENST00000377575 LAMA2P24043 3122 aaKnown RBP19.33■□□□□ 0.68
HMGN4-201ENST00000377575 FIBPO43427 364 aa19.32■□□□□ 0.68
HMGN4-201ENST00000377575 CDC27P30260 824 aa19.32■□□□□ 0.68
HMGN4-201ENST00000377575 ICAM3P32942 547 aa19.32■□□□□ 0.68
HMGN4-201ENST00000377575 MRPS9P82933 396 aaKnown RBP19.32■□□□□ 0.68
HMGN4-201ENST00000377575 MYSM1Q5VVJ2 828 aa19.32■□□□□ 0.68
HMGN4-201ENST00000377575 RNPC3Q96LT9 517 aaKnown RBP19.32■□□□□ 0.68
HMGN4-201ENST00000377575 SPATA33Q96N06 139 aa19.32■□□□□ 0.68
HMGN4-201ENST00000377575 AGXT2Q9BYV1 514 aa19.32■□□□□ 0.68
HMGN4-201ENST00000377575 TRMT13Q9NUP7 481 aaKnown RBP19.32■□□□□ 0.68
HMGN4-201ENST00000377575 CYP2C18P33260 490 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 CHMP4BP1P59074 171 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 UBE2SQ16763 222 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 PSRC1Q6PGN9 363 aaPredicted RBP19.31■□□□□ 0.68
HMGN4-201ENST00000377575 RUFY3Q7L099 469 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 NLRX1Q86UT6 975 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 ZFP91Q96JP5 570 aaPredicted RBP19.31■□□□□ 0.68
HMGN4-201ENST00000377575 NOC4LQ9BVI4 516 aaKnown RBP19.31■□□□□ 0.68
HMGN4-201ENST00000377575 GLT8D2Q9H1C3 349 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 MLXIPQ9HAP2 919 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 FAM217BQ9NTX9 383 aaPredicted RBP19.31■□□□□ 0.68
HMGN4-201ENST00000377575 CYP46A1Q9Y6A2 500 aa19.31■□□□□ 0.68
HMGN4-201ENST00000377575 V9GY48 417 aaPredicted RBP19.31■□□□□ 0.68
HMGN4-201ENST00000377575 F2P00734 622 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 HOXD8P13378 290 aaPredicted RBP19.3■□□□□ 0.68
HMGN4-201ENST00000377575 CSF2RAP15509 400 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 ADCY7P51828 1080 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 EPHB4P54760 987 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 SP2Q02086 613 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 NEDD9Q14511 834 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 SESTD1Q86VW0 696 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 CDHR1Q96JP9 859 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 ZSWIM6Q9HCJ5 1215 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 RIC8AQ9NPQ8 531 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 BARHL2Q9NY43 387 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 RTEL1Q9NZ71 1219 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 NOD1Q9Y239 953 aa19.3■□□□□ 0.68
HMGN4-201ENST00000377575 SPATA31C2B4DYI2 1134 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 STXBP3O00186 592 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 NOP56O00567 594 aaKnown RBP19.29■□□□□ 0.68
HMGN4-201ENST00000377575 SORBS3O60504 671 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 EIF5BO60841 1220 aaKnown RBP19.29■□□□□ 0.68
HMGN4-201ENST00000377575 PPFIA4O75335 1185 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 ZNF286BP0CG31 522 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 ADD1P35611 737 aaKnown RBP19.29■□□□□ 0.68
HMGN4-201ENST00000377575 HSDL1Q3SXM5 330 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 METTL7BQ6UX53 244 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 KAT2BQ92831 832 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 TM6SF1Q9BZW5 370 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 PCDHA6Q9UN73 950 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 PCDHA8Q9Y5H6 950 aa19.29■□□□□ 0.68
HMGN4-201ENST00000377575 UMODL1Q5DID0 1318 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 CYP2C9P11712 490 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 PSEN2P49810 448 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 AKAP17AQ02040 695 aaKnown RBP19.28■□□□□ 0.68
HMGN4-201ENST00000377575 MFSD10Q14728 455 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 PFKFB3Q16875 520 aaPredicted RBP19.28■□□□□ 0.68
HMGN4-201ENST00000377575 TYW1BQ6NUM6 668 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 CCDC155Q8N6L0 562 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 C7orf31Q8N865 590 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 GIMAP8Q8ND71 665 aaPredicted RBP19.28■□□□□ 0.68
HMGN4-201ENST00000377575 GPRASP2Q96D09 838 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.28■□□□□ 0.684e-13■■□□□ 11.5
HMGN4-201ENST00000377575 IL23AQ9NPF7 189 aa19.28■□□□□ 0.68
HMGN4-201ENST00000377575 SCN5AQ14524 2016 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 TRIP12Q14669 1992 aaPredicted RBP19.27■□□□□ 0.68
HMGN4-201ENST00000377575 SMCO2A6NFE2 343 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 PITPNM1O00562 1244 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 FOSP01100 380 aaPredicted RBP19.27■□□□□ 0.68
HMGN4-201ENST00000377575 SCG2P13521 617 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 CCL23P55773 120 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 EVCP57679 992 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 SMAD3P84022 425 aaKnown RBP19.27■□□□□ 0.68
HMGN4-201ENST00000377575 SEMA3FQ13275 785 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 BFSP2Q13515 415 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 PTGISQ16647 500 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 KIAA0753Q2KHM9 967 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 CCDC12Q8WUD4 166 aaPredicted RBP19.27■□□□□ 0.68
HMGN4-201ENST00000377575 PPP1R13LQ8WUF5 828 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 SENP7Q9BQF6 1050 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 WNT8AQ9H1J5 351 aa19.27■□□□□ 0.68
HMGN4-201ENST00000377575 MTIF3Q9H2K0 278 aaKnown RBP19.27■□□□□ 0.68
HMGN4-201ENST00000377575 AP3B2Q13367 1082 aa19.26■□□□□ 0.67
HMGN4-201ENST00000377575 TMEM240Q5SV17 173 aa19.26■□□□□ 0.67
HMGN4-201ENST00000377575 CYFIP1Q7L576 1253 aa19.26■□□□□ 0.67
HMGN4-201ENST00000377575 DEFB123Q8N688 67 aa19.26■□□□□ 0.67
HMGN4-201ENST00000377575 ALG1Q9BT22 464 aa19.26■□□□□ 0.67
HMGN4-201ENST00000377575 GTF2IRD1Q9UHL9 959 aa19.26■□□□□ 0.67
HMGN4-201ENST00000377575 HAS3O00219 553 aa19.25■□□□□ 0.67
HMGN4-201ENST00000377575 PRPF3O43395 683 aaKnown RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 PFKMP08237 780 aa19.25■□□□□ 0.67
HMGN4-201ENST00000377575 ACRP10323 421 aa19.25■□□□□ 0.67
HMGN4-201ENST00000377575 PDIA3P30101 505 aaKnown RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 MTMR1Q13613 665 aa19.25■□□□□ 0.67
HMGN4-201ENST00000377575 TOB2Q14106 344 aaPredicted RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 FAM109BQ6ICB4 259 aaPredicted RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 GDF6Q6KF10 455 aaPredicted RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 RPUSD2Q8IZ73 545 aaKnown RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 RETREG2Q8NC44 543 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms