RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 NOP9Q86U38 636 aaKnown RBP12.5□□□□□ -0.41
VCL-202ENST00000372755 DNAAF3Q8N9W5 541 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 LEMD3Q9Y2U8 911 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 SPDYE2BA6NHP3 402 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 SPDYE6P0CI01 402 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 SLC39A14Q15043 492 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 TMC4Q7Z404 712 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 PPWD1Q96BP3 646 aaKnown RBP12.5□□□□□ -0.41
VCL-202ENST00000372755 TRIM4Q9C037 500 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 GPR108Q9NPR9 543 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 BLMP54132 1417 aaPredicted RBP12.5□□□□□ -0.41
VCL-202ENST00000372755 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.5□□□□□ -0.41
VCL-202ENST00000372755 SPDYE1Q8NFV5 336 aaPredicted RBP12.5□□□□□ -0.41
VCL-202ENST00000372755 FBXO18Q8NFZ0 1043 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 PGBD1Q96JS3 809 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 PBKQ96KB5 322 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 USP44Q9H0E7 712 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 UBN1Q9NPG3 1134 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.5□□□□□ -0.41
VCL-202ENST00000372755 INSRP06213 1382 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 DTNBO60941 627 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 RASEFQ8IZ41 740 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 PDE11AQ9HCR9 933 aa12.5□□□□□ -0.41
VCL-202ENST00000372755 MAP3K15Q6ZN16 1313 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 ESRRGP62508 458 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 DNAJC24Q6P3W2 148 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 ANKRD13CQ8N6S4 541 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 PPP1R13BQ96KQ4 1090 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 NUDCD1Q96RS6 583 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 DARS2Q6PI48 645 aaKnown RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 CNOT10Q9H9A5 744 aaKnown RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 TCOF1Q13428 1488 aaKnown RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 INO80B-WBP1J3KQ70 363 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 IKBKBO14920 756 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 ZSCAN20P17040 1043 aaPredicted RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 SCRN1Q12765 414 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 SLMAPQ14BN4 828 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 TMED2Q15363 201 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 ZNF658Q5TYW1 1059 aaPredicted RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 ARMC9Q7Z3E5 817 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 SCYL3Q8IZE3 742 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 INO80BQ9C086 356 aaPredicted RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 PPEF1O14829 653 aaPredicted RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 APOEP02649 317 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 MT-ND3P03897 115 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 MYO1EQ12965 1108 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 SURF1Q15526 300 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 ARHGAP27Q6ZUM4 889 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 NLGN1Q8N2Q7 840 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 SLC35F6Q8N357 371 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 EIF2AQ9BY44 585 aaKnown RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 TPX2Q9ULW0 747 aaKnown RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 GSPT1P15170 499 aaKnown RBP12.49□□□□□ -0.41
VCL-202ENST00000372755 SEPT2Q15019 361 aa12.49□□□□□ -0.41
VCL-202ENST00000372755 LRRC24Q50LG9 513 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 PI4K2BQ8TCG2 481 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 FGD4Q96M96 766 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 NUP153P49790 1475 aaKnown RBP12.48□□□□□ -0.41
VCL-202ENST00000372755 IFNAR2P48551 515 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 KCTD6Q8NC69 237 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 PDE8BO95263 885 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 CCDC138Q96M89 665 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 SLC8A2Q9UPR5 921 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 WDR64B1ANS9 1081 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 GOLGA8SH3BPF8 625 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 KCTD16Q68DU8 428 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 TDRD7Q8NHU6 1098 aaKnown RBP12.48□□□□□ -0.41
VCL-202ENST00000372755 POLR3EQ9NVU0 708 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 PACSIN2Q9UNF0 486 aaPredicted RBP12.48□□□□□ -0.41
VCL-202ENST00000372755 PLXNC1O60486 1568 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 ANXA13P27216 316 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 CCT5P48643 541 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 ZBTB17Q13105 803 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 TCP11X2Q5H9J9 407 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 LRRC4Q9HBW1 653 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 EPB41L5Q9HCM4 733 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 TXLNGQ9NUQ3 528 aa12.48□□□□□ -0.41
VCL-202ENST00000372755 PPARGP37231 505 aaPredicted RBP12.47□□□□□ -0.41
VCL-202ENST00000372755 FKBP3Q00688 224 aaKnown RBP12.47□□□□□ -0.41
VCL-202ENST00000372755 RBL2Q08999 1139 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 SIX6OS1Q8N1H7 587 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 PLTPP55058 493 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 PSMD2Q13200 908 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 SNX1Q13596 522 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 FBXO41Q8TF61 875 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 ZC3H15Q8WU90 426 aaKnown RBP12.47□□□□□ -0.41
VCL-202ENST00000372755 CEP170P1Q96L14 293 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 KANSL2Q9H9L4 492 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 PCDHA5Q9Y5H7 936 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 PRPSAP2O60256 369 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 ALCAMQ13740 583 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 CDC37Q16543 378 aaPredicted RBP12.47□□□□□ -0.41
VCL-202ENST00000372755 ZMYM1Q5SVZ6 1142 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 SPOPLQ6IQ16 392 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 PDCD7Q8N8D1 485 aaKnown RBP12.47□□□□□ -0.41
VCL-202ENST00000372755 CHEK2O96017 543 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 BASP1P80723 227 aaKnown RBP12.47□□□□□ -0.41
VCL-202ENST00000372755 KSR1Q8IVT5 923 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 TTC25Q96NG3 672 aa12.47□□□□□ -0.41
VCL-202ENST00000372755 COPRSQ9NQ92 184 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms