RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 HSDL1Q3SXM5 330 aa21.15■□□□□ 0.98
CLN3-202ENST00000355477 TYW1BQ6NUM6 668 aa21.15■□□□□ 0.98
CLN3-202ENST00000355477 DEFB123Q8N688 67 aa21.15■□□□□ 0.98
CLN3-202ENST00000355477 RNPC3Q96LT9 517 aaKnown RBP21.15■□□□□ 0.98
CLN3-202ENST00000355477 INPP4AQ96PE3 977 aaPredicted RBP21.15■□□□□ 0.98
CLN3-202ENST00000355477 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.15■□□□□ 0.983e-6■□□□□ 10.1
CLN3-202ENST00000355477 WNT8AQ9H1J5 351 aa21.15■□□□□ 0.98
CLN3-202ENST00000355477 STAM2O75886 525 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 ACRP10323 421 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 ICAM3P32942 547 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 RCAN1P53805 252 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 CCL23P55773 120 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 TMEM240Q5SV17 173 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 PCNX4Q63HM2 1172 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 FBXL16Q8N461 479 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 SPATA33Q96N06 139 aa21.14■□□□□ 0.97
CLN3-202ENST00000355477 SPATA31C2B4DYI2 1134 aa21.13■□□□□ 0.97
CLN3-202ENST00000355477 EPB41L2O43491 1005 aaKnown RBP21.13■□□□□ 0.97
CLN3-202ENST00000355477 SUPT20HL2P0C7V6 817 aa21.13■□□□□ 0.97
CLN3-202ENST00000355477 ZNF286BP0CG31 522 aa21.13■□□□□ 0.97
CLN3-202ENST00000355477 HOXD8P13378 290 aaPredicted RBP21.13■□□□□ 0.97
CLN3-202ENST00000355477 PTPN11Q06124 597 aaPredicted RBP21.13■□□□□ 0.97
CLN3-202ENST00000355477 GNPTABQ3T906 1256 aa21.13■□□□□ 0.97
CLN3-202ENST00000355477 AGXT2Q9BYV1 514 aa21.13■□□□□ 0.97
CLN3-202ENST00000355477 PPFIA4O75335 1185 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 PSMA5P28066 241 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 METAP2P50579 478 aaKnown RBP eCLIP21.12■□□□□ 0.97
CLN3-202ENST00000355477 XRRA1Q6P2D8 792 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 ZNF365Q70YC5 407 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 TET1Q8NFU7 2136 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 VWCEQ96DN2 955 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 CTAGE1Q96RT6 745 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 MLXIPQ9HAP2 919 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 IL23AQ9NPF7 189 aa21.12■□□□□ 0.97
CLN3-202ENST00000355477 STXBP3O00186 592 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 F2P00734 622 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 PSEN2P49810 448 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 NAPAP54920 295 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 GDF6Q6KF10 455 aaPredicted RBP21.11■□□□□ 0.97
CLN3-202ENST00000355477 SCLYQ96I15 445 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 ALG1Q9BT22 464 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 ZSWIM6Q9HCJ5 1215 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 HDAC6Q9UBN7 1215 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 PCDHA6Q9UN73 950 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 TELO2Q9Y4R8 837 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 PCDHA8Q9Y5H6 950 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 TANC1Q9C0D5 1861 aa21.11■□□□□ 0.97
CLN3-202ENST00000355477 GBF1Q92538 1859 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 HAS3O00219 553 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 FIBPO43427 364 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 SMAD3P84022 425 aaKnown RBP21.1■□□□□ 0.97
CLN3-202ENST00000355477 MFSD10Q14728 455 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 PTGISQ16647 500 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 KIAA0753Q2KHM9 967 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 RUFY3Q7L099 469 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 CYFIP1Q7L576 1253 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 SESTD1Q86VW0 696 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 RIC8AQ9NPQ8 531 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 MTMR10Q9NXD2 777 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 BARHL2Q9NY43 387 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 NID2Q14112 1375 aa21.1■□□□□ 0.97
CLN3-202ENST00000355477 KAT6AQ92794 2004 aa21.09■□□□□ 0.97
CLN3-202ENST00000355477 CDH23Q9H251 3354 aa21.09■□□□□ 0.97
CLN3-202ENST00000355477 CCDC196A0A1B0GTZ2 297 aa21.09■□□□□ 0.97
CLN3-202ENST00000355477 SPDYE3A6NKU9 549 aa21.09■□□□□ 0.97
CLN3-202ENST00000355477 ITGB5P18084 799 aa21.09■□□□□ 0.97
CLN3-202ENST00000355477 RASIP1Q5U651 963 aa21.09■□□□□ 0.97
CLN3-202ENST00000355477 FAM109BQ6ICB4 259 aaPredicted RBP21.09■□□□□ 0.97
CLN3-202ENST00000355477 C16orf70Q9BSU1 422 aa21.09■□□□□ 0.97
CLN3-202ENST00000355477 SMCO2A6NFE2 343 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 ATP9AO75110 1047 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 PDIA3P30101 505 aaKnown RBP21.08■□□□□ 0.97
CLN3-202ENST00000355477 EVCP57679 992 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 MYO9BQ13459 2157 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 TOB2Q14106 344 aaPredicted RBP21.08■□□□□ 0.97
CLN3-202ENST00000355477 NEDD9Q14511 834 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 PFKFB3Q16875 520 aaPredicted RBP21.08■□□□□ 0.97
CLN3-202ENST00000355477 PPP1R18Q6NYC8 613 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 PSRC1Q6PGN9 363 aaPredicted RBP21.08■□□□□ 0.97
CLN3-202ENST00000355477 METTL7BQ6UX53 244 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 NLRX1Q86UT6 975 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 C7orf31Q8N865 590 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 PGBD1Q96JS3 809 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 KATNAL1Q9BW62 490 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 GTF2IRD1Q9UHL9 959 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 NOD1Q9Y239 953 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 UBIAD1Q9Y5Z9 338 aa21.08■□□□□ 0.97
CLN3-202ENST00000355477 CHD9Q3L8U1 2897 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 hCG_1984214I3L0E3 225 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 ADAMTS3O15072 1205 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 FGBP02675 491 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 ADCY7P51828 1080 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 HIC1Q14526 733 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 NTRK3Q16288 839 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 PKN1Q16512 942 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 ZNF713Q8N859 430 aaPredicted RBP21.07■□□□□ 0.96
CLN3-202ENST00000355477 HERVK_113Q902F9 699 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 PHKBQ93100 1093 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 FAM161BQ96MY7 647 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 GPR20Q99678 358 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms