RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 MUTYHQ9UIF7 546 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 DDX19BQ9UMR2 479 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 UPP2O95045 317 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 MS4A1P11836 297 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 EDNRBP24530 442 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 IRS1P35568 1242 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 PTK7Q13308 1070 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 MFSD10Q14728 455 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 RPAINQ86UA6 219 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 DHX37Q8IY37 1157 aaKnown RBP13.14□□□□□ -0.31
RTN3-204ENST00000354497 MS4A3Q96HJ5 214 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 SAMD11Q96NU1 681 aa13.14□□□□□ -0.31
RTN3-204ENST00000354497 NSUN3Q9H649 340 aaKnown RBP13.14□□□□□ -0.31
RTN3-204ENST00000354497 ZNF286BP0CG31 522 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 RBM10P98175 930 aaKnown RBP13.13□□□□□ -0.31
RTN3-204ENST00000354497 ZNF200P98182 395 aaPredicted RBP13.13□□□□□ -0.31
RTN3-204ENST00000354497 ARHGAP1Q07960 439 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 RBL2Q08999 1139 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 DGKDQ16760 1214 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 RRP12Q5JTH9 1297 aaKnown RBP13.13□□□□□ -0.31
RTN3-204ENST00000354497 PRSS33Q8NF86 280 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 DBF4BQ8NFT6 615 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 WNT8BQ93098 351 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 KATNAL1Q9BW62 490 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.13□□□□□ -0.31
RTN3-204ENST00000354497 H3BNC9 293 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 SORBS3O60504 671 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 THPOP40225 353 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 HNRNPUQ00839 825 aaKnown RBP eCLIP13.13□□□□□ -0.31
RTN3-204ENST00000354497 MBTPS1Q14703 1052 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 KIAA0753Q2KHM9 967 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 BTNL9Q6UXG8 535 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 FBXO11Q86XK2 927 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 TMEM192Q8IY95 271 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 POP1Q99575 1024 aaKnown RBP13.13□□□□□ -0.31
RTN3-204ENST00000354497 FSD1Q9BTV5 496 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 ZBTB40Q9NUA8 1239 aa13.13□□□□□ -0.31
RTN3-204ENST00000354497 TRIP12Q14669 1992 aaPredicted RBP13.12□□□□□ -0.31
RTN3-204ENST00000354497 EMSYQ7Z589 1322 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 RSPH10B2B2RC85 870 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 RSPH10BP0C881 870 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 TOP1P11387 765 aaKnown RBP13.12□□□□□ -0.31
RTN3-204ENST00000354497 CTNNB1P35222 781 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 ANP32AP39687 249 aaKnown RBP13.12□□□□□ -0.31
RTN3-204ENST00000354497 PTPN5P54829 565 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 HTRA4P83105 476 aaPredicted RBP13.12□□□□□ -0.31
RTN3-204ENST00000354497 TRIM71Q2Q1W2 868 aaKnown RBP13.12□□□□□ -0.31
RTN3-204ENST00000354497 CCDC62Q6P9F0 684 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 TRAF7Q6Q0C0 670 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 TMEM47Q9BQJ4 181 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 IGFLR1Q9H665 355 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 PNMA2Q9UL42 364 aa13.12□□□□□ -0.31
RTN3-204ENST00000354497 ST18O60284 1047 aa13.11□□□□□ -0.31
RTN3-204ENST00000354497 RNF135Q8IUD6 432 aa13.11□□□□□ -0.31
RTN3-204ENST00000354497 SUGP1Q8IWZ8 645 aaKnown RBP13.11□□□□□ -0.31
RTN3-204ENST00000354497 MRVI1Q9Y6F6 885 aa13.11□□□□□ -0.31
RTN3-204ENST00000354497 BRWD1Q9NSI6 2320 aa13.11□□□□□ -0.31
RTN3-204ENST00000354497 STXBP3O00186 592 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 MBTPS2O43462 519 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 CTSHP09668 335 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 NBR1Q14596 966 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 STXBP2Q15833 593 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 HERC4Q5GLZ8 1057 aaPredicted RBP13.1□□□□□ -0.31
RTN3-204ENST00000354497 IER5LQ5T953 404 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 SEPT8Q92599 483 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 PBXIP1Q96AQ6 731 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 TAAR1Q96RJ0 339 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 IFIH1Q9BYX4 1025 aaKnown RBP13.1□□□□□ -0.31
RTN3-204ENST00000354497 CHMP4BQ9H444 224 aaKnown RBP13.1□□□□□ -0.31
RTN3-204ENST00000354497 FAM86C1Q9NVL1 165 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 PCDHB13Q9Y5F0 798 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 WDR19Q8NEZ3 1342 aa13.1□□□□□ -0.31
RTN3-204ENST00000354497 TMEM221A6NGB7 291 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 M0R296 226 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 F2P00734 622 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 PDHBP11177 359 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 EIF2AK2P19525 551 aaKnown RBP13.09□□□□□ -0.31
RTN3-204ENST00000354497 DLX2Q07687 328 aaPredicted RBP13.09□□□□□ -0.31
RTN3-204ENST00000354497 SMAD2Q15796 467 aaKnown RBP13.09□□□□□ -0.31
RTN3-204ENST00000354497 ZMYM1Q5SVZ6 1142 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 ARHGEF16Q5VV41 709 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 FIBCD1Q8N539 461 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 NSUN6Q8TEA1 469 aaKnown RBP13.09□□□□□ -0.31
RTN3-204ENST00000354497 TBC1D5Q92609 795 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 EDAQ92838 391 aa13.09□□□□□ -0.31
RTN3-204ENST00000354497 RTN4Q9NQC3 1192 aaKnown RBP13.09□□□□□ -0.31
RTN3-204ENST00000354497 DDX41Q9UJV9 622 aaKnown RBP13.09□□□□□ -0.31
RTN3-204ENST00000354497 C17orf102A2RUQ5 167 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 NCK2O43639 380 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 GFRA3O60609 400 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 GOLGA8HP0CJ92 632 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 LTBRP36941 435 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 ZNF543Q08ER8 600 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 HYAL1Q12794 435 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 LAMC2Q13753 1193 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 HIC1Q14526 733 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 PLEKHG4Q58EX7 1191 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 PPTC7Q8NI37 304 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 SYTL5Q8TDW5 730 aaPredicted RBP13.08□□□□□ -0.32
RTN3-204ENST00000354497 TOP1MTQ969P6 601 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms