RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 P2RX7Q99572 595 aaKnown RBP14.56□□□□□ -0.08
COL18A1-201ENST00000342220 VPS16Q9H269 839 aa14.56□□□□□ -0.08
COL18A1-201ENST00000342220 INTS13Q9NVM9 706 aa14.56□□□□□ -0.08
COL18A1-201ENST00000342220 TRAF5O00463 557 aa14.56□□□□□ -0.08
COL18A1-201ENST00000342220 ETF1P62495 437 aaKnown RBP14.56□□□□□ -0.08
COL18A1-201ENST00000342220 CTTNQ14247 550 aaKnown RBP14.56□□□□□ -0.08
COL18A1-201ENST00000342220 TEPSINQ96N21 525 aa14.56□□□□□ -0.08
COL18A1-201ENST00000342220 SLF1Q9BQI6 1058 aa14.56□□□□□ -0.08
COL18A1-201ENST00000342220 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.56□□□□□ -0.084e-11■■■□□ 18.8
COL18A1-201ENST00000342220 CLSTN1O94985 981 aa14.55□□□□□ -0.08
COL18A1-201ENST00000342220 SNRNP48Q6IEG0 339 aaKnown RBP14.55□□□□□ -0.08
COL18A1-201ENST00000342220 EXOC1Q9NV70 894 aa14.55□□□□□ -0.08
COL18A1-201ENST00000342220 ZNF446Q9NWS9 450 aa14.55□□□□□ -0.08
COL18A1-201ENST00000342220 LONP1P36776 959 aaKnown RBP14.55□□□□□ -0.08
COL18A1-201ENST00000342220 MDM2Q00987 491 aaPredicted RBP14.55□□□□□ -0.08
COL18A1-201ENST00000342220 ZNF280CQ8ND82 737 aa14.55□□□□□ -0.08
COL18A1-201ENST00000342220 TRIM47Q96LD4 638 aa14.55□□□□□ -0.08
COL18A1-201ENST00000342220 MEIS2O14770 477 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 FANCGO15287 622 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 POLR3GO15318 223 aaPredicted RBP14.54□□□□□ -0.08
COL18A1-201ENST00000342220 FCER1AP12319 257 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 SUPT20HL1Q3ZLR7 823 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 KANK3Q6NY19 840 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 TRIM65Q6PJ69 517 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 MKL1Q969V6 931 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 FAM86B1E9PN63 330 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 ZBED4O75132 1171 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 FAM86B2P0C5J1 330 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 REXO1L1PQ8IX06 675 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 PRPF38AQ8NAV1 312 aaKnown RBP14.54□□□□□ -0.08
COL18A1-201ENST00000342220 CCDC47Q96A33 483 aaKnown RBP14.54□□□□□ -0.08
COL18A1-201ENST00000342220 ZBTB39O15060 712 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 RPN1P04843 607 aaKnown RBP14.54□□□□□ -0.08
COL18A1-201ENST00000342220 NF2P35240 595 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 MUM1L1Q5H9M0 696 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 SV2BQ7L1I2 683 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 NCAPG2Q86XI2 1143 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 APOBEC3FQ8IUX4 373 aaKnown RBP14.54□□□□□ -0.08
COL18A1-201ENST00000342220 GMCL1Q96IK5 515 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 DRC1Q96MC2 740 aa14.54□□□□□ -0.08
COL18A1-201ENST00000342220 KCNK18Q7Z418 384 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 NCAPGQ9BPX3 1015 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 NAV1Q8NEY1 1877 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 CTNND1O60716 968 aaKnown RBP14.53□□□□□ -0.08
COL18A1-201ENST00000342220 CD44P16070 742 aaKnown RBP14.53□□□□□ -0.08
COL18A1-201ENST00000342220 CT47A1Q5JQC4 288 aaPredicted RBP14.53□□□□□ -0.08
COL18A1-201ENST00000342220 EMILIN3Q9NT22 766 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 MRPL11Q9Y3B7 192 aaKnown RBP14.53□□□□□ -0.08
COL18A1-201ENST00000342220 RIPK3Q9Y572 518 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 ZNF646O15015 1829 aaPredicted RBP14.53□□□□□ -0.08
COL18A1-201ENST00000342220 NID2Q14112 1375 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 MYO1CO00159 1063 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 URI1O94763 535 aaPredicted RBP14.53□□□□□ -0.08
COL18A1-201ENST00000342220 PTPRAP18433 802 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 EPHX2P34913 555 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 ZNF280AP59817 542 aaPredicted RBP14.53□□□□□ -0.08
COL18A1-201ENST00000342220 VGLL4Q14135 290 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 ARHGAP29Q52LW3 1261 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 TMEM139Q8IV31 216 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 MTRQ99707 1265 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 TAB2Q9NYJ8 693 aa14.53□□□□□ -0.08
COL18A1-201ENST00000342220 CCP110O43303 1012 aa14.52□□□□□ -0.08
COL18A1-201ENST00000342220 GAS7O60861 476 aa14.52□□□□□ -0.08
COL18A1-201ENST00000342220 H2AFXP16104 143 aaPredicted RBP14.52□□□□□ -0.08
COL18A1-201ENST00000342220 CASQ1P31415 396 aa14.52□□□□□ -0.08
COL18A1-201ENST00000342220 ENOX2Q16206 610 aaKnown RBP14.52□□□□□ -0.08
COL18A1-201ENST00000342220 SCYL3Q8IZE3 742 aa14.52□□□□□ -0.08
COL18A1-201ENST00000342220 C4orf32Q8N8J7 132 aa14.52□□□□□ -0.08
COL18A1-201ENST00000342220 GMCL1P1Q8NEA9 526 aa14.52□□□□□ -0.08
COL18A1-201ENST00000342220 LCMT1Q9UIC8 334 aa14.52□□□□□ -0.08
COL18A1-201ENST00000342220 PHLPP2Q6ZVD8 1323 aa14.52□□□□□ -0.09
COL18A1-201ENST00000342220 PHF20L1A8MW92 1017 aa14.52□□□□□ -0.09
COL18A1-201ENST00000342220 RBAK-RBAKDNI3L0D1 243 aa14.52□□□□□ -0.09
COL18A1-201ENST00000342220 BAATQ14032 418 aaPredicted RBP14.52□□□□□ -0.09
COL18A1-201ENST00000342220 LRCH2Q5VUJ6 765 aa14.52□□□□□ -0.09
COL18A1-201ENST00000342220 NELFBQ8WX92 580 aa14.52□□□□□ -0.09
COL18A1-201ENST00000342220 RNF146Q9NTX7 359 aa14.52□□□□□ -0.09
COL18A1-201ENST00000342220 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.52□□□□□ -0.09
COL18A1-201ENST00000342220 CLCN6P51797 869 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 ADKP55263 362 aaKnown RBP14.51□□□□□ -0.09
COL18A1-201ENST00000342220 BACE1P56817 501 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 RPS6P62753 249 aaKnown RBP14.51□□□□□ -0.09
COL18A1-201ENST00000342220 HERC4Q5GLZ8 1057 aaPredicted RBP14.51□□□□□ -0.09
COL18A1-201ENST00000342220 DDX60LQ5H9U9 1706 aaKnown RBP14.51□□□□□ -0.09
COL18A1-201ENST00000342220 ARHGEF16Q5VV41 709 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 ZNF579Q8NAF0 562 aaKnown RBP14.51□□□□□ -0.09
COL18A1-201ENST00000342220 TAAR1Q96RJ0 339 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 MMRN2Q9H8L6 949 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 FAM53CQ9NYF3 392 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 PPP2R2CQ9Y2T4 447 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 ATRNL1Q5VV63 1379 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 SYNRGQ9UMZ2 1314 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 TUBB4AP04350 444 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 ARL6IP4Q66PJ3 421 aaKnown RBP14.51□□□□□ -0.09
COL18A1-201ENST00000342220 ANKRD35Q8N283 1001 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 IL31RAQ8NI17 732 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 RMDN3Q96TC7 470 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 ADARB2Q9NS39 739 aaKnown RBP14.51□□□□□ -0.09
COL18A1-201ENST00000342220 FEM1BQ9UK73 627 aa14.51□□□□□ -0.09
COL18A1-201ENST00000342220 N4BP3O15049 544 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms