RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SLF2Q8IX21 1173 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 FBXL16Q8N461 479 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 PACSIN1Q9BY11 444 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 LIMA1Q9UHB6 759 aaKnown RBP13.15□□□□□ -0.3
USP1-201ENST00000339950 ZNF211Q13398 564 aaPredicted RBP13.14□□□□□ -0.31
USP1-201ENST00000339950 NAALADL2Q58DX5 795 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 FUT2Q10981 343 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 ZNF746Q6NUN9 644 aaPredicted RBP13.14□□□□□ -0.31
USP1-201ENST00000339950 ADGRF4Q8IZF3 695 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 MGARPQ8TDB4 240 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 NARFQ9UHQ1 456 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 PLA2G4BP0C869 781 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 GRM4Q14833 912 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 TMED8Q6PL24 325 aaPredicted RBP13.14□□□□□ -0.31
USP1-201ENST00000339950 SEMA6BQ9H3T3 888 aa13.14□□□□□ -0.31
USP1-201ENST00000339950 SSTR3P32745 418 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 RPS6KA1Q15418 735 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 VPS36Q86VN1 386 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 TRIM58Q8NG06 486 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 DHTKD1Q96HY7 919 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 PAIP2Q9BPZ3 127 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 DDX47Q9H0S4 455 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 BCAS3Q9H6U6 928 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 EMILIN3Q9NT22 766 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 ARMCX3Q9UH62 379 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 DNM3Q9UQ16 869 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 FER1L4A9Z1Z3 1794 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 MYCLP12524 364 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 SLCO1A2P46721 670 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 GRAPQ13588 217 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 PEX26Q7Z412 305 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 IRF2BP1Q8IU81 584 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 GRAPLQ8TC17 118 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 DYDC1Q8WWB3 177 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 NUP58Q9BVL2 599 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 SLC9A1P19634 815 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 ARHGAP25P42331 645 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 CERKLQ49MI3 558 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 ARL6IP4Q66PJ3 421 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 AEBP2Q6ZN18 517 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 CAPN12Q6ZSI9 719 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 RSRC2Q7L4I2 434 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 RBM17Q96I25 401 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 TDRD3Q9H7E2 651 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 TMEM51Q9NW97 253 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 REXO2Q9Y3B8 237 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 PPP1R12BO60237 982 aaPredicted RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 TRIM49P0CI25 452 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 TRIM49CP0CI26 452 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 PLCG2P16885 1265 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 MAN2A1Q16706 1144 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 CFAP221Q4G0U5 840 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 CYP2W1Q8TAV3 490 aa13.13□□□□□ -0.31
USP1-201ENST00000339950 RBM12Q9NTZ6 932 aaKnown RBP13.13□□□□□ -0.31
USP1-201ENST00000339950 GOLGA8IPA6NC78 632 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 GOLGA8JA6NMD2 632 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 RSPH10B2B2RC85 870 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 E7EVH7 732 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 ORC4O43929 436 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 RSPH10BP0C881 870 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 USP14P54578 494 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 ICA1Q05084 483 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 SF3B3Q15393 1217 aaKnown RBP13.12□□□□□ -0.31
USP1-201ENST00000339950 TMEM132AQ24JP5 1023 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 FAM83BQ5T0W9 1011 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 SFR1Q86XK3 245 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 SCLT1Q96NL6 688 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 DUSP9Q99956 384 aaKnown RBP13.12□□□□□ -0.31
USP1-201ENST00000339950 PTPN22Q9Y2R2 807 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 FLT1P17948 1338 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 RGPD5Q99666 1765 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 ZBTB39O15060 712 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 EXOC3O60645 756 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 RPS6KA4O75676 772 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 FKBP3Q00688 224 aaKnown RBP13.12□□□□□ -0.31
USP1-201ENST00000339950 COASYQ13057 564 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 TRADDQ15628 312 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 NPY5RQ15761 445 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 NBPF9Q3BBW0 867 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 TTI2Q6NXR4 508 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 KIAA0895Q8NCT3 520 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 FAM212AQ96EL1 285 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 OSBPL9Q96SU4 736 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 ADAM33Q9BZ11 813 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 TOPAZ1Q8N9V7 1692 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 GOLGA6L7A0A1B0GV03 622 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 XRCC5P13010 732 aaKnown RBP13.12□□□□□ -0.31
USP1-201ENST00000339950 MCM3P25205 808 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 CARSP49589 748 aaKnown RBP13.12□□□□□ -0.31
USP1-201ENST00000339950 OTUD6BQ8N6M0 293 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 SPATA4Q8NEY3 305 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 GOLGA5Q8TBA6 731 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 EXOC4Q96A65 974 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 FGFBP2Q9BYJ0 223 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 CAPN11Q9UMQ6 739 aa13.12□□□□□ -0.31
USP1-201ENST00000339950 GSTTP1A0A1W2PQM5 241 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 CCDC169A6NNP5 214 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 RAD17O75943 681 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms