RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 HERC5Q9UII4 1024 aaKnown RBP6.92□□□□□ -1.3
PRKDC-202ENST00000338368 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.92□□□□□ -1.3
PRKDC-202ENST00000338368 IVNS1ABPQ9Y6Y0 642 aa6.92□□□□□ -1.3
PRKDC-202ENST00000338368 AFPP02771 609 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 DALRD3Q5D0E6 543 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 DPY19L2Q6NUT2 758 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CCDC170Q8IYT3 715 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CCDC127Q96BQ5 260 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 POLD4Q9HCU8 107 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 ABHD10Q9NUJ1 306 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 ENTPD3O75355 529 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PEX26Q7Z412 305 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 ARHGAP27Q6ZUM4 889 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CCDC50Q8IVM0 306 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 MLXIPQ9HAP2 919 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PARVGQ9HBI0 331 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 MYO9BQ13459 2157 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PRPF6O94906 941 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PTF1AQ7RTS3 328 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CCDC155Q8N6L0 562 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 TTC26A0AVF1 554 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 TNNI1P19237 187 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 SULF1Q8IWU6 871 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 KLHL7Q8IXQ5 586 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 TRIM9Q9C026 710 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 MAD2L2Q9UI95 211 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 KIF4AO95239 1232 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 FCER1AP12319 257 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 SMARCA1P28370 1054 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 USP11P51784 963 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PDIA5Q14554 519 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 RABGGTAQ92696 567 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 RTFDC1Q9BY42 306 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 SMC1AQ14683 1233 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 NCAPG2Q86XI2 1143 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PKNOX2Q96KN3 472 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 RASAL2Q9UJF2 1139 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 ZBTB12Q9Y330 459 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 ESYT2A0FGR8 921 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 NDUFB10O96000 172 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CTTNQ14247 550 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 SND1Q7KZF4 910 aaKnown RBP eCLIP6.91□□□□□ -1.37e-7■■□□□ 11.8
PRKDC-202ENST00000338368 ILDR1Q86SU0 546 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 ELOA2Q8IYF1 753 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 ARFGAP2Q8N6H7 521 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PRPF38AQ8NAV1 312 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PDS5AQ29RF7 1337 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 KCNK3O14649 394 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 LIG4P49917 911 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CCZ1BP86790 482 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CCZ1P86791 482 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 CALCOCO2Q13137 446 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 DNAJC21Q5F1R6 531 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 PAXIP1Q6ZW49 1069 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 GLG1Q92896 1179 aa6.91□□□□□ -1.3
PRKDC-202ENST00000338368 RAVER2Q9HCJ3 691 aaKnown RBP6.91□□□□□ -1.3
PRKDC-202ENST00000338368 FAM170AA1A519 330 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 KCNB1Q14721 858 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 ARHGEF6Q15052 776 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 DPH6Q7L8W6 267 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 PPM1KQ8N3J5 372 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 UBE2Q2Q8WVN8 375 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 PCIF1Q9H4Z3 704 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 SYNCQ9H7C4 482 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 LIMA1Q9UHB6 759 aaKnown RBP6.9□□□□□ -1.3
PRKDC-202ENST00000338368 SLIT3O75094 1523 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 EARS2Q5JPH6 523 aaKnown RBP6.9□□□□□ -1.3
PRKDC-202ENST00000338368 ANKRD40Q6AI12 368 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 SFR1Q86XK3 245 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 ADD3Q9UEY8 706 aaKnown RBP6.9□□□□□ -1.3
PRKDC-202ENST00000338368 AMFRQ9UKV5 643 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.9□□□□□ -1.3
PRKDC-202ENST00000338368 TOGARAM2Q6ZUX3 1019 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 NAP1L3Q99457 506 aaPredicted RBP6.9□□□□□ -1.3
PRKDC-202ENST00000338368 PAK2Q13177 524 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 SLC15A2Q16348 729 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 SUPT20HL1Q3ZLR7 823 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 E4F1Q66K89 784 aaPredicted RBP6.9□□□□□ -1.3
PRKDC-202ENST00000338368 PPP4R3CPQ6ZMV5 832 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 CEP170P1Q96L14 293 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 POTEB3A0JP26 581 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 POTECB2RU33 542 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 POTEBQ6S5H4 581 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 DYDC2Q96IM9 177 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 TRIM31Q9BZY9 425 aa6.9□□□□□ -1.3
PRKDC-202ENST00000338368 BZW2Q9Y6E2 419 aaKnown RBP6.9□□□□□ -1.3
PRKDC-202ENST00000338368 NOP56O00567 594 aaKnown RBP6.9□□□□□ -1.31
PRKDC-202ENST00000338368 SRGNP10124 158 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 IL1R1P14778 569 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 GABPB1Q06547 395 aaPredicted RBP6.9□□□□□ -1.31
PRKDC-202ENST00000338368 TBC1D10BQ4KMP7 808 aaPredicted RBP6.9□□□□□ -1.31
PRKDC-202ENST00000338368 SEL1L2Q5TEA6 688 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 IFT20Q8IY31 132 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 SMIM22K7EJ46 135 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 NCBP1Q09161 790 aaKnown RBP6.9□□□□□ -1.31
PRKDC-202ENST00000338368 DAGLBQ8NCG7 672 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 FAM151AQ8WW52 585 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 GDAP1L1Q96MZ0 367 aa6.9□□□□□ -1.31
PRKDC-202ENST00000338368 ZNF341Q9BYN7 854 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms