RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 NR3C2P08235 984 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 APLP1P51693 650 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 ENGASEQ8NFI3 743 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 MXRA8Q9BRK3 442 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 MSH4O15457 936 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 SHCBP1Q8NEM2 672 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 DHX58Q96C10 678 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 PDLIM2Q96JY6 352 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 MBOAT7Q96N66 472 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 CLSTN2Q9H4D0 955 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 KCNMB3Q9NPA1 279 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 CREBZFQ9NS37 354 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 ADD3Q9UEY8 706 aaKnown RBP11.3□□□□□ -0.6
HMGB3-201ENST00000325307 A0A0G2JMZ2 1700 aa11.3□□□□□ -0.6
HMGB3-201ENST00000325307 POTEMA6NI47 508 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 SETQ01105 290 aaPredicted RBP11.29□□□□□ -0.6
HMGB3-201ENST00000325307 FAM110CQ1W6H9 321 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 CKAP2LQ8IYA6 745 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 LENG9Q96B70 501 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 CAPNS2Q96L46 248 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 ZNF577Q9BSK1 485 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 MAF1Q9H063 256 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 MORF4L1Q9UBU8 362 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 HPSEQ9Y251 543 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 IGLV3-22A0A075B6J6 115 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 TBX3O15119 743 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 ITGB5P18084 799 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 NOGQ13253 232 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 CNNM3Q8NE01 707 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 ETNPPLQ8TBG4 499 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 AK8Q96MA6 479 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 FAM20AQ96MK3 541 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 PLIN2Q99541 437 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 WDR11Q9BZH6 1224 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 ZFYVE28Q9HCC9 887 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 AOC2O75106 756 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 ARP10275 920 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 FXR2P51116 673 aaKnown RBP eCLIP11.29□□□□□ -0.6
HMGB3-201ENST00000325307 MRPS9P82933 396 aaKnown RBP11.29□□□□□ -0.6
HMGB3-201ENST00000325307 MTMR1Q13613 665 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 KARSQ15046 597 aaKnown RBP11.29□□□□□ -0.6
HMGB3-201ENST00000325307 LRCH2Q5VUJ6 765 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 CABP7Q86V35 215 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 DNERQ8NFT8 737 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 CDK5RAP3Q96JB5 506 aa11.29□□□□□ -0.6
HMGB3-201ENST00000325307 ZCCHC17Q9NP64 241 aaKnown RBP11.29□□□□□ -0.6
HMGB3-201ENST00000325307 MEIS1O00470 390 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 GAS7O60861 476 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 CCDC173Q0VFZ6 552 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 NCAPH2Q6IBW4 605 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 RNF214Q8ND24 703 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 TSPY26PQ9H489 355 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 CCDC39Q9UFE4 941 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 CHMP2AO43633 222 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 ALDH5A1P51649 535 aaPredicted RBP11.28□□□□□ -0.6
HMGB3-201ENST00000325307 PDE4DQ08499 809 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 KRT79Q5XKE5 535 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 XRRA1Q6P2D8 792 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 VSIG10LQ86VR7 867 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 CEP57L1Q8IYX8 460 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 MPHOSPH6Q99547 160 aaKnown RBP11.28□□□□□ -0.6
HMGB3-201ENST00000325307 KCNH7Q9NS40 1196 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 FRMPD4Q14CM0 1322 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 RBBP6Q7Z6E9 1792 aaKnown RBP11.28□□□□□ -0.6
HMGB3-201ENST00000325307 B4DLN1 442 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 DDX39AO00148 427 aaKnown RBP11.28□□□□□ -0.6
HMGB3-201ENST00000325307 IPO5O00410 1097 aaKnown RBP11.28□□□□□ -0.6
HMGB3-201ENST00000325307 LETM1O95202 739 aaPredicted RBP11.28□□□□□ -0.6
HMGB3-201ENST00000325307 STXBP2Q15833 593 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 LONRF3Q496Y0 759 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 NLRX1Q86UT6 975 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 IGSF22Q8N9C0 903 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 SNX29Q8TEQ0 813 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 CALML4Q96GE6 196 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 CCDC34Q96HJ3 373 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 IWS1Q96ST2 819 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 JADE2Q9NQC1 790 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 SERTAD1Q9UHV2 236 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 UBIAD1Q9Y5Z9 338 aa11.28□□□□□ -0.6
HMGB3-201ENST00000325307 FAM237AA0A1B0GTK4 181 aa11.27□□□□□ -0.6
HMGB3-201ENST00000325307 STAT6P42226 847 aa11.27□□□□□ -0.6
HMGB3-201ENST00000325307 PDIA5Q14554 519 aa11.27□□□□□ -0.6
HMGB3-201ENST00000325307 RRAGBQ5VZM2 374 aa11.27□□□□□ -0.6
HMGB3-201ENST00000325307 IQUBQ8NA54 791 aa11.27□□□□□ -0.6
HMGB3-201ENST00000325307 TCEAL9Q9UHQ7 104 aa11.27□□□□□ -0.6
HMGB3-201ENST00000325307 A0A087X0B3 334 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 SOWAHBA6NEL2 793 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 TLR2O60603 784 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 ADORA2AP29274 412 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 MAPK4P31152 587 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 CRHR2Q13324 411 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 GNPTABQ3T906 1256 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 KRBA2Q6ZNG9 492 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 GPR142Q7Z601 462 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 FAM133AQ8N9E0 248 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 ERCC4Q92889 916 aaPredicted RBP11.27□□□□□ -0.61
HMGB3-201ENST00000325307 HOOK1Q9UJC3 728 aaKnown RBP11.27□□□□□ -0.61
HMGB3-201ENST00000325307 RASSF10A6NK89 507 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 CTAGE5O15320 804 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 TM4SF4P48230 202 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms