RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 POTEB3A0JP26 581 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 SHTN1A0MZ66 631 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 POTECB2RU33 542 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 TCP1P17987 556 aaKnown RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 HPDP32754 393 aaPredicted RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 POTEBQ6S5H4 581 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 BCAS4Q8TDM0 211 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 TSPYL1Q9H0U9 437 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 SH2D4AQ9H788 454 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 PSTPIP2Q9H939 334 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 EPB41L5Q9HCM4 733 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 FAM184BQ9ULE4 1060 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 NFU1Q9UMS0 254 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 ZSCAN5CA6NGD5 496 aaPredicted RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 H0YHG0 523 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 MRPL12P52815 198 aaKnown RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 CFAP58Q5T655 872 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 AMIGO3Q86WK7 504 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 CCDC65Q8IXS2 484 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 FNBP4Q8N3X1 1017 aaPredicted RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 SH2D3CQ8N5H7 860 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 PLAGL2Q9UPG8 496 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 ANO9A1A5B4 782 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 USP17L10C9JJH3 530 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 FECHP22830 423 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 FKBP3Q00688 224 aaKnown RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 COASYQ13057 564 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 PABPC4Q13310 644 aaKnown RBP eCLIP14.23□□□□□ -0.138e-8■■□□□ 13.6
HMGCS1-201ENST00000325110 MEA1Q16626 185 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 CFAP221Q4G0U5 840 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 SLF2Q8IX21 1173 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 RAD54LQ92698 747 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 ERGIC2Q96RQ1 377 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 RBM12Q9NTZ6 932 aaKnown RBP14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 BLOC1S4Q9NUP1 217 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 TMEM51Q9NW97 253 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 COL4A3BPQ9Y5P4 624 aa14.23□□□□□ -0.13
HMGCS1-201ENST00000325110 RASSF10A6NK89 507 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 PALMO75781 387 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 HEXIM1O94992 359 aaKnown RBP14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 PDHBP11177 359 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 ADAM9Q13443 819 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 MUM1L1Q5H9M0 696 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 CUL5Q93034 780 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 STK17AQ9UEE5 414 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 ECM29Q5VYK3 1845 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 KCNK3O14649 394 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 PRR16Q569H4 304 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 ODF2Q5BJF6 829 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 SLC10A5Q5PT55 438 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 FAM83BQ5T0W9 1011 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 LRRC31Q6UY01 552 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 MTMR8Q96EF0 704 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 CCDC43Q96MW1 224 aaKnown RBP14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 PNMA5Q96PV4 448 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 RTFDC1Q9BY42 306 aaPredicted RBP14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 USP40Q9NVE5 1235 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 DISP2A7MBM2 1401 aa14.22□□□□□ -0.13
HMGCS1-201ENST00000325110 CEP104O60308 925 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 SF3A3Q12874 501 aaKnown RBP eCLIP14.21□□□□□ -0.132e-6■□□□□ 11.1
HMGCS1-201ENST00000325110 PLCD3Q8N3E9 789 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 GUF1Q8N442 669 aaKnown RBP14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 DAGLBQ8NCG7 672 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 TMX4Q9H1E5 349 aaPredicted RBP14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 THRAP3Q9Y2W1 955 aaKnown RBP14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 ITGB4P16144 1822 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 EBAG9O00559 213 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 CHMP2AO43633 222 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 SYF2O95926 243 aaKnown RBP14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 LIG3P49916 1009 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 PDCLQ13371 301 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 ASIC2Q16515 512 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 CENPPQ6IPU0 288 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 TRIM31Q9BZY9 425 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 LRRC27Q9C0I9 530 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 STIM2Q9P246 746 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 COL4A1P02462 1669 aa14.21□□□□□ -0.13
HMGCS1-201ENST00000325110 POTEFA5A3E0 1075 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 OPA1O60313 960 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 POTEIP0CG38 1075 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 NR2F2P24468 414 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 POTEGQ6S5H5 508 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 POTEEQ6S8J3 1075 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 C16orf86Q6ZW13 317 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 ADGRF4Q8IZF3 695 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 CAPS2Q9BXY5 557 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 PSD3Q9NYI0 1048 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 PCDHB13Q9Y5F0 798 aa14.21□□□□□ -0.14
HMGCS1-201ENST00000325110 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 CETN3O15182 167 aa14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 CLSTN1O94985 981 aa14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 KRT14P02533 472 aa14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 ACTN1P12814 892 aa14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 PLS1Q14651 629 aa14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 ZC3H12CQ9C0D7 883 aaKnown RBP14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 TTYH3Q9C0H2 523 aa14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.2□□□□□ -0.141e-6■■■■■ 64.3
HMGCS1-201ENST00000325110 PCDHA1Q9Y5I3 950 aa14.2□□□□□ -0.14
HMGCS1-201ENST00000325110 GOLGA6L10A6NI86 522 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms