RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 RHOBTB3O94955 611 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 ATP1A1P05023 1023 aaKnown RBP17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 TMEM266Q2M3C6 531 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 TRAPPC11Q7Z392 1133 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 CNOT6LQ96LI5 555 aaKnown RBP17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 DDX25Q9UHL0 483 aaKnown RBP17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 PCDHA1Q9Y5I3 950 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 LAD1O00515 517 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 EDIL3O43854 480 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 MNAT1P51948 309 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 ECM1Q16610 540 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 CERKLQ49MI3 558 aaPredicted RBP17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 TTI2Q6NXR4 508 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 SLC30A10Q6XR72 485 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 EP400NLQ6ZTU2 488 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 MB21D1Q8N884 522 aa17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 DUSP9Q99956 384 aaKnown RBP17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 LUC7L2Q9Y383 392 aaKnown RBP17.23■□□□□ 0.35
SHROOM1-201ENST00000319854 PNMA6FA0A0J9YX94 578 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 FECHP22830 423 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 PDE6BP35913 854 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 STAT3P40763 770 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 PRPHP41219 470 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 KIAA0895Q8NCT3 520 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 P2RX5Q93086 422 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 NOC4LQ9BVI4 516 aaKnown RBP17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 SAMM50Q9Y512 469 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 UBR3Q6ZT12 1888 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 KRT79Q5XKE5 535 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 CCDC91Q7Z6B0 441 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 MASTLQ96GX5 879 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 ECE2O60344 883 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 TSR1Q2NL82 804 aaKnown RBP17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 QRICH1Q2TAL8 776 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 LARP4BQ92615 738 aaKnown RBP17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 CUL5Q93034 780 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 PNMA5Q96PV4 448 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 FAM207AQ9NSI2 230 aaPredicted RBP17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 BLOC1S4Q9NUP1 217 aa17.22■□□□□ 0.35
SHROOM1-201ENST00000319854 NPHP3-ACAD11A0A0J9YXS1 232 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 CLRN2A0PK11 232 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 KLRG2A4D1S0 409 aaPredicted RBP17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 TUBBP07437 444 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 TMTC1Q8IUR5 882 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 BCAS4Q8TDM0 211 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 AK8Q96MA6 479 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 SELENOOQ9BVL4 669 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 ZNF185O15231 689 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 ZYXQ15942 572 aaKnown RBP17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 SLFN13Q68D06 897 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 NELFCDQ8IXH7 590 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 FAM76AQ8TAV0 307 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 TANGO6Q9C0B7 1094 aa17.21■□□□□ 0.35
SHROOM1-201ENST00000319854 LRRC10BA6NIK2 292 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 LGALS16A8MUM7 142 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 EBAG9O00559 213 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 ZBTB5O15062 677 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 GRIN2DO15399 1336 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 BRD2P25440 801 aaKnown RBP17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 HOXA13P31271 388 aaPredicted RBP17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 AMPD3Q01432 767 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 CYP27A1Q02318 531 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 CYP26C1Q6V0L0 522 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 CCDC155Q8N6L0 562 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 DDX12PQ92771 950 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 SEMA6BQ9H3T3 888 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 E9PMD0 336 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 TULP1O00294 542 aaPredicted RBP17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 PDE2AO00408 941 aaPredicted RBP17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 KCNB1Q14721 858 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 SH3BP5LQ7L8J4 393 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 MTMR9Q96QG7 549 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 PCDHA12Q9UN75 941 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 GOLGA6CA6NDK9 693 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 H0YIN7 160 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 MEIS1O00470 390 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 GOLGA6DP0CG33 693 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 MRPL12P52815 198 aaKnown RBP17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 MRPS25P82663 173 aaKnown RBP17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 ICA1Q05084 483 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 GOLGA6AQ9NYA3 693 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 FAM198AQ9UFP1 575 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 KIAA1024Q9UPX6 916 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 CDK5RAP2Q96SN8 1893 aa17.2■□□□□ 0.34
SHROOM1-201ENST00000319854 ADAMTSL1Q8N6G6 1762 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 TCP10L2B9ZVM9 353 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 CCNE1P24864 410 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 CCNI2Q6ZMN8 369 aaPredicted RBP17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 CRACR2AQ9BSW2 395 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 MMRN2Q9H8L6 949 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 MYO1AQ9UBC5 1043 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 ENOX2Q16206 610 aaKnown RBP17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 CDC37Q16543 378 aaPredicted RBP17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 OR8K1Q8NGG5 319 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 SWAP70Q9UH65 585 aa17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 EPN1Q9Y6I3 576 aaPredicted RBP17.19■□□□□ 0.34
SHROOM1-201ENST00000319854 IGKV6D-41A0A0C4DH26 115 aa17.18■□□□□ 0.34
SHROOM1-201ENST00000319854 POTEB3A0JP26 581 aa17.18■□□□□ 0.34
SHROOM1-201ENST00000319854 POTECB2RU33 542 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms