RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 MRRFQ96E11 262 aaKnown RBP16.11■□□□□ 0.17
PTPN9-201ENST00000306726 FAM212AQ96EL1 285 aa16.11■□□□□ 0.17
PTPN9-201ENST00000306726 PHF20Q9BVI0 1012 aa16.11■□□□□ 0.17
PTPN9-201ENST00000306726 DUOX1Q9NRD9 1551 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 NPHP3-ACAD11A0A0J9YXS1 232 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 SOCS7O14512 581 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 PPFIA4O75335 1185 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 CYP4A11Q02928 519 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 TBCKQ8TEA7 893 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 P2RX5Q93086 422 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 PIGSQ96S52 555 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 VPS33BQ9H267 617 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 COL11A2P13942 1736 aaPredicted RBP16.1■□□□□ 0.17
PTPN9-201ENST00000306726 SFI1A8K8P3 1242 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 IFNAR2P48551 515 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 SV2BQ7L1I2 683 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 ZNF622Q969S3 477 aaKnown RBP eCLIP16.1■□□□□ 0.17
PTPN9-201ENST00000306726 ATF5Q9Y2D1 282 aaPredicted RBP16.1■□□□□ 0.17
PTPN9-201ENST00000306726 SPEF2Q9C093 1822 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 RFX7Q2KHR2 1363 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 LGALS16A8MUM7 142 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 MAP2K7O14733 419 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 PRPF3O43395 683 aaKnown RBP16.1■□□□□ 0.17
PTPN9-201ENST00000306726 IRAK1P51617 712 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 RBM5P52756 815 aaKnown RBP eCLIP16.1■□□□□ 0.17
PTPN9-201ENST00000306726 ICE2Q659A1 982 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 TTLL6Q8N841 843 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 SPATA4Q8NEY3 305 aa16.1■□□□□ 0.17
PTPN9-201ENST00000306726 C6orf229H3BNL8 230 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 FAM153BP0C7A2 387 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 FGFR2P21802 821 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 TMOD1P28289 359 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 HIBADHP31937 336 aaKnown RBP16.09■□□□□ 0.17
PTPN9-201ENST00000306726 SLCO1A2P46721 670 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 TROAPQ12815 778 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 FAM153CQ494X1 144 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 CDKAL1Q5VV42 579 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 TXNRD3Q86VQ6 643 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 EHBP1Q8NDI1 1231 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 MED4Q9NPJ6 270 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 FAM153AQ9UHL3 310 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 BMP15O95972 392 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 MAGEA9P43362 315 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 TSEN2Q8NCE0 465 aaKnown RBP16.09■□□□□ 0.17
PTPN9-201ENST00000306726 LBHD1Q9BQE6 289 aaPredicted RBP16.09■□□□□ 0.17
PTPN9-201ENST00000306726 MLXIPLQ9NP71 852 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 DNAJC17Q9NVM6 304 aaKnown RBP16.09■□□□□ 0.17
PTPN9-201ENST00000306726 GGA1Q9UJY5 639 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 PDS5AQ29RF7 1337 aaKnown RBP16.09■□□□□ 0.17
PTPN9-201ENST00000306726 FAM196BA6NMK8 535 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 CHMP2AO43633 222 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 SYF2O95926 243 aaKnown RBP16.09■□□□□ 0.17
PTPN9-201ENST00000306726 PIM2Q9P1W9 311 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 A0A1B0GUL6 1792 aa16.09■□□□□ 0.17
PTPN9-201ENST00000306726 PALMO75781 387 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 CALM1P0DP23 149 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 CALM2P0DP24 149 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 CALM3P0DP25 149 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 KRT13P13646 458 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 CALML3P27482 149 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 ATP2C1P98194 919 aaPredicted RBP16.08■□□□□ 0.17
PTPN9-201ENST00000306726 TADA2BQ86TJ2 420 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 CCDC51Q96ER9 411 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 PCDHB13Q9Y5F0 798 aa16.08■□□□□ 0.17
PTPN9-201ENST00000306726 DHX9Q08211 1270 aaKnown RBP16.08■□□□□ 0.16
PTPN9-201ENST00000306726 KLHL30Q0D2K2 578 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 WDR59Q6PJI9 974 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 CCNI2Q6ZMN8 369 aaPredicted RBP16.08■□□□□ 0.16
PTPN9-201ENST00000306726 CPLX4Q7Z7G2 160 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 RTKN2Q8IZC4 609 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 RBM28Q9NW13 759 aaKnown RBP16.08■□□□□ 0.16
PTPN9-201ENST00000306726 OPA1O60313 960 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 ACTN1P12814 892 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 MCM3P25205 808 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 PNMA8AQ86V59 439 aaPredicted RBP16.08■□□□□ 0.16
PTPN9-201ENST00000306726 GIMAP7Q8NHV1 300 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 OSBPL9Q96SU4 736 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 PACSIN1Q9BY11 444 aa16.08■□□□□ 0.16
PTPN9-201ENST00000306726 MKRN1Q9UHC7 482 aaKnown RBP16.08■□□□□ 0.16
PTPN9-201ENST00000306726 TDP2O95551 362 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 THOC1Q96FV9 657 aaKnown RBP16.07■□□□□ 0.16
PTPN9-201ENST00000306726 NOX5Q96PH1 765 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 TSG101Q99816 390 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 DDX47Q9H0S4 455 aaKnown RBP16.07■□□□□ 0.16
PTPN9-201ENST00000306726 NDST4Q9H3R1 872 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 DCP1AQ9NPI6 582 aaPredicted RBP16.07■□□□□ 0.16
PTPN9-201ENST00000306726 FAM53CQ9NYF3 392 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 ZNF804BA4D1E1 1349 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 CLIC2O15247 247 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 TAL1P17542 331 aaPredicted RBP16.07■□□□□ 0.16
PTPN9-201ENST00000306726 PTGER2P43116 358 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 APTXQ7Z2E3 356 aaKnown RBP16.07■□□□□ 0.16
PTPN9-201ENST00000306726 PHLDB2Q86SQ0 1253 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 TACO1Q9BSH4 297 aaKnown RBP16.07■□□□□ 0.16
PTPN9-201ENST00000306726 ZNF804AQ7Z570 1209 aa16.07■□□□□ 0.16
PTPN9-201ENST00000306726 ZNF579Q8NAF0 562 aaKnown RBP16.07■□□□□ 0.16
PTPN9-201ENST00000306726 KRT79Q5XKE5 535 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 IRF2BP1Q8IU81 584 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 ADSSL1Q8N142 457 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms