RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 KRT26Q7Z3Y9 468 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 SRLQ86TD4 932 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 CCDC125Q86Z20 511 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 LAMC1P11047 1609 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 PRAMEF22A3QJZ6 481 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 MAP3K7O43318 606 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 PRKAB2O43741 272 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 MMEP08473 750 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 YWHAGP61981 247 aaKnown RBP eCLIP13.94□□□□□ -0.18
COL3A1-201ENST00000304636 PABPC4Q13310 644 aaKnown RBP eCLIP13.94□□□□□ -0.18
COL3A1-201ENST00000304636 BSPRYQ5W0U4 402 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 SLC17A8Q8NDX2 589 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 COG1Q8WTW3 980 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 RUBCNQ92622 972 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 CCDC127Q96BQ5 260 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-201ENST00000304636 GDAQ9Y2T3 454 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 GMNCA6NCL1 334 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 TCP10Q12799 353 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 E4F1Q66K89 784 aaPredicted RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 ALKBH5Q6P6C2 394 aaKnown RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 MIS12Q9H081 205 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 MRPL11Q9Y3B7 192 aaKnown RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CFAP65Q6ZU64 1925 aaKnown RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 PALMO75781 387 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 BTDP43251 543 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CYP4A11Q02928 519 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 ADCY1Q08828 1119 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 IQCB1Q15051 598 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CCDC93Q567U6 631 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 GPATCH4Q5T3I0 446 aaKnown RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CPXCR1Q8N123 301 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 ELAC2Q9BQ52 826 aaKnown RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 AZI2Q9H6S1 392 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 SH3GLB2Q9NR46 395 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 GJB4Q9NTQ9 266 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 PCDHA1Q9Y5I3 950 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 PODXLO00592 558 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 MAPK13O15264 365 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 PFDN1O60925 122 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 DLATP10515 647 aaKnown RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 NXNQ6DKJ4 435 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 PI16Q6UXB8 463 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CDKL2Q92772 493 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 ADAMTS1Q9UHI8 967 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CCNL1Q9UK58 526 aaPredicted RBP13.93□□□□□ -0.18
COL3A1-201ENST00000304636 SNX1Q13596 522 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 XKR9Q5GH70 373 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CYP4F22Q6NT55 531 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 PPP1R2P3Q6NXS1 205 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 FAM81BQ96LP2 452 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 CEP72Q9P209 647 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 ANGPTL2Q9UKU9 493 aa13.93□□□□□ -0.18
COL3A1-201ENST00000304636 GRID2IPA4D2P6 1211 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 SGK1O00141 431 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 LMNAP02545 664 aaKnown RBP13.92□□□□□ -0.18
COL3A1-201ENST00000304636 GARSP41250 739 aaKnown RBP13.92□□□□□ -0.18
COL3A1-201ENST00000304636 MSH2P43246 934 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 RCN2Q14257 317 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 NUGGCQ68CJ6 796 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 NSMFQ6X4W1 530 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 WDR24Q96S15 920 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 VIPAS39Q9H9C1 493 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 ST7Q9NRC1 585 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 NLRP14Q86W24 1093 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 KSR1Q8IVT5 923 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 GDAP1Q8TB36 358 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 YEATS2Q9ULM3 1422 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 NOP56O00567 594 aaKnown RBP13.92□□□□□ -0.18
COL3A1-201ENST00000304636 DMP1Q13316 513 aaPredicted RBP13.92□□□□□ -0.18
COL3A1-201ENST00000304636 OSBPL9Q96SU4 736 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 TMOD4Q9NZQ9 345 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 RNF8O76064 485 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 FGGP02679 453 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 NT5C2P49902 561 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 NLRP7Q8WX94 980 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 METP08581 1390 aa13.92□□□□□ -0.18
COL3A1-201ENST00000304636 GSPT2Q8IYD1 628 aaKnown RBP13.92□□□□□ -0.18
COL3A1-201ENST00000304636 DCTN3O75935 186 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 ATP5HO75947 161 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 ZSCAN20P17040 1043 aaPredicted RBP13.91□□□□□ -0.18
COL3A1-201ENST00000304636 MRPS25P82663 173 aaKnown RBP13.91□□□□□ -0.18
COL3A1-201ENST00000304636 RINT1Q6NUQ1 792 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 RHOT2Q8IXI1 618 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 TBK1Q9UHD2 729 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 EXOC1LA0A1B0GW35 172 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 RCAN1P53805 252 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 PPP2R2AP63151 447 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 HVCN1Q96D96 273 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 DYNLL1P63167 89 aaKnown RBP13.91□□□□□ -0.18
COL3A1-201ENST00000304636 RPS6KA2Q15349 733 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 SCYL2Q6P3W7 929 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 JDP2Q8WYK2 163 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 CARD10Q9BWT7 1032 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 PIH1D3Q9NQM4 214 aaKnown RBP13.91□□□□□ -0.18
COL3A1-201ENST00000304636 ABCA8O94911 1581 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 GOLGA8QA0A0J9YX86 632 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 GOLGA8OA6NCC3 632 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 GOLGA8NF8WBI6 632 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 TEX33O43247 280 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms