RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 GPATCH4Q5T3I0 446 aaKnown RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 PRPF38BQ5VTL8 546 aaKnown RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 SNRNP48Q6IEG0 339 aaKnown RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 BTNL9Q6UXG8 535 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 SLC30A10Q6XR72 485 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 FASTKD5Q7L8L6 764 aaKnown RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 FAM160B2Q86V87 743 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 SMARCC2Q8TAQ2 1214 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 SMCR8Q8TEV9 937 aaPredicted RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 TBC1D5Q92609 795 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 HHIPL1Q96JK4 782 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 ZSCAN31Q96LW9 406 aaPredicted RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 PARK7Q99497 189 aaKnown RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 ALG1Q9BT22 464 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 PORCNQ9H237 461 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 RIOX1Q9H6W3 641 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 EFCC1Q9HA90 598 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 RBM28Q9NW13 759 aaKnown RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 TMEM260Q9NX78 707 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 RBPJLQ9UBG7 517 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 FEM1BQ9UK73 627 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 CCPG1Q9ULG6 757 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 RBBP6Q7Z6E9 1792 aaKnown RBP7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 SMCHD1A6NHR9 2005 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 LCTP09848 1927 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 STK36Q9NRP7 1315 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 MYH6P13533 1939 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 UNCXA6NJT0 531 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 KIF28PB7ZC32 967 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 OPLAHO14841 1288 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 TRPA1O75762 1119 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 HOXA7P31268 230 aaPredicted RBP7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 HOXA13P31271 388 aaPredicted RBP7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 RCAN1P53805 252 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 SSRP1Q08945 709 aaKnown RBP7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 SREBF2Q12772 1141 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 CBLBQ13191 982 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 WDR78Q5VTH9 848 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 PARP9Q8IXQ6 854 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 TMTC2Q8N394 836 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 MTMR8Q96EF0 704 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 RRP36Q96EU6 259 aaKnown RBP7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 MOV10L1Q9BXT6 1211 aaKnown RBP7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 SLC38A10Q9HBR0 1119 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 RNF146Q9NTX7 359 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 RNF186Q9NXI6 227 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 COL20A1Q9P218 1284 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 ZNF214Q9UL59 606 aaPredicted RBP7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 SYNPO2Q9UMS6 1093 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 SMC3Q9UQE7 1217 aa7.49□□□□□ -1.21
DEPDC4-201ENST00000299185 VPS37CA5D8V6 355 aaPredicted RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 ZBTB5O15062 677 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 PRPF3O43395 683 aaKnown RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 HSP90AA1P07900 732 aaKnown RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 BCRP11274 1271 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 SCG2P13521 617 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 MCM2P49736 904 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 GNAQP50148 359 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 NAPAP54920 295 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 ERVK-9P63128 1117 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 ERVK-24P63145 666 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 UBXN2AP68543 259 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 COG2Q14746 738 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 NPY5RQ15761 445 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 PFKFB3Q16875 520 aaPredicted RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 EARS2Q5JPH6 523 aaKnown RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 PPP1R26Q5T8A7 1209 aaPredicted RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 LYPD4Q6UWN0 246 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 NSMFQ6X4W1 530 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 LBX2Q6XYB7 198 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 FERMT3Q86UX7 667 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 NCAPG2Q86XI2 1143 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 FBXO11Q86XK2 927 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 BEND7Q8N7W2 519 aaPredicted RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 CHURC1Q8WUH1 139 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 CLEC4DQ8WXI8 215 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 MAP3K14Q99558 947 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 RNF26Q9BY78 433 aaPredicted RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 SPATC1LQ9H0A9 340 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 SEC63Q9UGP8 760 aaKnown RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 CTDP1Q9Y5B0 961 aaPredicted RBP7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 PLXNB2O15031 1838 aa7.48□□□□□ -1.21
DEPDC4-201ENST00000299185 TNRC18O15417 2968 aaPredicted RBP7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 LRRC37A2A6NM11 1700 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 PNMA6FA0A0J9YX94 578 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 ZBED4O75132 1171 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 CDKL5O76039 1030 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 DEXIO95424 95 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 ICAM1P05362 532 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 PGK2P07205 417 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 HSPA8P11142 646 aaKnown RBP7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 ERCC3P19447 782 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 TM4SF4P48230 202 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 AKAP17AQ02040 695 aaKnown RBP7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 PABPC4Q13310 644 aaKnown RBP eCLIP7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 BECN1Q14457 450 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 PLA2G4EQ3MJ16 856 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 FOXD4L6Q3SYB3 417 aaPredicted RBP7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 JAKMIP3Q5VZ66 844 aa7.47□□□□□ -1.21
DEPDC4-201ENST00000299185 KRT40Q6A162 431 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms