RNA–Protein interactions for RNA: ENST00000288022.1

PDF-201, Transcript of peptide deformylase, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDF, Length 1,158 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDF-201ENST00000288022 COLQQ9Y215 455 aaPredicted RBP28.78■■■□□ 2.2
PDF-201ENST00000288022 DEXIO95424 95 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 MMP3P08254 477 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 GNA11P29992 359 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 SP2Q02086 613 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 AP3B2Q13367 1082 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 JAKMIP3Q5VZ66 844 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 ANKRD33Q7Z3H0 272 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 EMID1Q96A84 441 aaPredicted RBP28.77■■■□□ 2.2
PDF-201ENST00000288022 TOX2Q96NM4 488 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 MLXIPQ9HAP2 919 aa28.77■■■□□ 2.2
PDF-201ENST00000288022 UPF2Q9HAU5 1272 aaKnown RBP28.77■■■□□ 2.2
PDF-201ENST00000288022 SPATA31C2B4DYI2 1134 aa28.76■■■□□ 2.19
PDF-201ENST00000288022 ICAM3P32942 547 aa28.76■■■□□ 2.19
PDF-201ENST00000288022 CLK2P49760 499 aaKnown RBP28.76■■■□□ 2.19
PDF-201ENST00000288022 CDK7P50613 346 aa28.76■■■□□ 2.19
PDF-201ENST00000288022 CELF3Q5SZQ8 465 aaKnown RBP28.76■■■□□ 2.19
PDF-201ENST00000288022 SPATA33Q96N06 139 aa28.76■■■□□ 2.19
PDF-201ENST00000288022 LBHD1Q9BQE6 289 aaPredicted RBP28.76■■■□□ 2.19
PDF-201ENST00000288022 TLR3O15455 904 aaKnown RBP28.75■■■□□ 2.19
PDF-201ENST00000288022 MAGEA10P43363 369 aaPredicted RBP28.75■■■□□ 2.19
PDF-201ENST00000288022 CHMP4BP1P59074 171 aa28.75■■■□□ 2.19
PDF-201ENST00000288022 DGKDQ16760 1214 aa28.75■■■□□ 2.19
PDF-201ENST00000288022 MYSM1Q5VVJ2 828 aa28.75■■■□□ 2.19
PDF-201ENST00000288022 SH3RF1Q7Z6J0 888 aa28.75■■■□□ 2.19
PDF-201ENST00000288022 REXO1Q8N1G1 1221 aaKnown RBP28.75■■■□□ 2.19
PDF-201ENST00000288022 PPTC7Q8NI37 304 aa28.75■■■□□ 2.19
PDF-201ENST00000288022 TMEM39AQ9NV64 488 aa28.75■■■□□ 2.19
PDF-201ENST00000288022 MYH7BA7E2Y1 1941 aa28.75■■■□□ 2.19
PDF-201ENST00000288022 GRIN2DO15399 1336 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 NLRP5P59047 1200 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 MDM2Q00987 491 aaPredicted RBP28.74■■■□□ 2.19
PDF-201ENST00000288022 FAAP100Q0VG06 881 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 SEMA3FQ13275 785 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 NEDD9Q14511 834 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 ME3Q16798 604 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 NECAB1Q8N987 351 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 BICD2Q8TD16 824 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 GPRASP2Q96D09 838 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 SH3GLB2Q9NR46 395 aa28.74■■■□□ 2.19
PDF-201ENST00000288022 TRIM43BA6NCK2 446 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 LARGE1O95461 756 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 ITGB5P18084 799 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 MCTP2Q6DN12 878 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 SLC43A3Q8NBI5 491 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 TRIM43Q96BQ3 446 aaPredicted RBP28.73■■■□□ 2.19
PDF-201ENST00000288022 CDHR1Q96JP9 859 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 SEZ6LQ9BYH1 1024 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 UBIAD1Q9Y5Z9 338 aa28.73■■■□□ 2.19
PDF-201ENST00000288022 RBM25P49756 843 aaKnown RBP28.72■■■□□ 2.19
PDF-201ENST00000288022 MTMR1Q13613 665 aa28.72■■■□□ 2.19
PDF-201ENST00000288022 HSDL1Q3SXM5 330 aa28.72■■■□□ 2.19
PDF-201ENST00000288022 FAM47CQ5HY64 1035 aa28.72■■■□□ 2.19
PDF-201ENST00000288022 CYFIP1Q7L576 1253 aa28.72■■■□□ 2.19
PDF-201ENST00000288022 FAM126BQ8IXS8 530 aa28.72■■■□□ 2.19
PDF-201ENST00000288022 GDF15Q99988 308 aa28.72■■■□□ 2.19
PDF-201ENST00000288022 CEP290O15078 2479 aa28.72■■■□□ 2.19
PDF-201ENST00000288022 NOP56O00567 594 aaKnown RBP28.71■■■□□ 2.19
PDF-201ENST00000288022 ADAMTS3O15072 1205 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 DTNBO60941 627 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 ZNF76P36508 570 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 SREBF1P36956 1147 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 NBPF20Q3BBV1 942 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 RASGRP4Q8TDF6 673 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 GTF3C6Q969F1 213 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 AIFM3Q96NN9 605 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 BCAS3Q9H6U6 928 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 JADE2Q9NQC1 790 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 PKD2L1Q9P0L9 805 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 DNAH12Q6ZR08 3092 aa28.71■■■□□ 2.19
PDF-201ENST00000288022 RAG1P15918 1043 aa28.7■■■□□ 2.18
PDF-201ENST00000288022 ARHGAP4P98171 946 aa28.7■■■□□ 2.18
PDF-201ENST00000288022 PPP1R13LQ8WUF5 828 aa28.7■■■□□ 2.18
PDF-201ENST00000288022 KIF2CQ99661 725 aa28.7■■■□□ 2.18
PDF-201ENST00000288022 MXRA8Q9BRK3 442 aa28.7■■■□□ 2.18
PDF-201ENST00000288022 STK36Q9NRP7 1315 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 LTBP2Q14767 1821 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 KIAA0355O15063 1070 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 ZNF286BP0CG31 522 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 SP4Q02446 784 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 METTL7BQ6UX53 244 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 GIMAP8Q8ND71 665 aaPredicted RBP28.69■■■□□ 2.18
PDF-201ENST00000288022 SENP7Q9BQF6 1050 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 UBE2OQ9C0C9 1292 aaKnown RBP28.69■■■□□ 2.18
PDF-201ENST00000288022 LIMCH1Q9UPQ0 1083 aa28.69■■■□□ 2.18
PDF-201ENST00000288022 DOCK5Q9H7D0 1870 aa28.68■■■□□ 2.18
PDF-201ENST00000288022 PPFIA4O75335 1185 aa28.68■■■□□ 2.18
PDF-201ENST00000288022 CTDNEP1O95476 244 aa28.68■■■□□ 2.18
PDF-201ENST00000288022 BADQ92934 168 aa28.68■■■□□ 2.18
PDF-201ENST00000288022 TRPV6Q9H1D0 765 aa28.68■■■□□ 2.18
PDF-201ENST00000288022 ORC3Q9UBD5 711 aaPredicted RBP28.68■■■□□ 2.18
PDF-201ENST00000288022 MAFGO15525 162 aa28.67■■■□□ 2.18
PDF-201ENST00000288022 B4GALT4O60513 344 aa28.67■■■□□ 2.18
PDF-201ENST00000288022 CD4P01730 458 aa28.67■■■□□ 2.18
PDF-201ENST00000288022 XBP1P17861 261 aa28.67■■■□□ 2.18
PDF-201ENST00000288022 CEP55Q53EZ4 464 aa28.67■■■□□ 2.18
PDF-201ENST00000288022 HABP4Q5JVS0 413 aaKnown RBP28.67■■■□□ 2.18
PDF-201ENST00000288022 CYP2W1Q8TAV3 490 aa28.67■■■□□ 2.18
PDF-201ENST00000288022 KATNAL1Q9BW62 490 aa28.67■■■□□ 2.18
PDF-201ENST00000288022 PRO3102Q9H379 93 aa28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms