RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 BRD3Q15059 726 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 LRRC41Q15345 812 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 SH2D4BQ5SQS7 431 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.48□□□□□ -0.89
PTCD3-201ENST00000254630 TUBGCP2Q9BSJ2 902 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 SERPINB13Q9UIV8 391 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 INO80B-WBP1J3KQ70 363 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 PCK1P35558 622 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 RYBPQ8N488 228 aaPredicted RBP9.48□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF341Q9BYN7 854 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 INO80BQ9C086 356 aaPredicted RBP9.48□□□□□ -0.89
PTCD3-201ENST00000254630 CCDC68Q9H2F9 335 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 NUB1Q9Y5A7 615 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 ABCA6Q8N139 1617 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 PPFIA4O75335 1185 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 MAPK4P31152 587 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 ARPP19P56211 112 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 USP17L2Q6R6M4 530 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 TULP4Q9NRJ4 1543 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 RPAP1Q9BWH6 1393 aaPredicted RBP9.47□□□□□ -0.89
PTCD3-201ENST00000254630 KRT1P04264 644 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 ARHGAP25P42331 645 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 MESDQ14696 234 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 MAP7D3Q8IWC1 876 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 SKA2Q8WVK7 121 aaPredicted RBP9.47□□□□□ -0.89
PTCD3-201ENST00000254630 POLR3EQ9NVU0 708 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 RWDD2AQ9UIY3 292 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 OVOS2A0A0G2JMS6 1433 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 OVOS2A0A0J9YW53 1432 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 OVOS2Q6IE36 1432 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF335Q9H4Z2 1342 aaPredicted RBP9.47□□□□□ -0.89
PTCD3-201ENST00000254630 RNF40O75150 1001 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 CRKP46108 304 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 VPS41P49754 854 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 SF3A3Q12874 501 aaKnown RBP eCLIP9.47□□□□□ -0.891e-6■■□□□ 12.4
PTCD3-201ENST00000254630 MYO1EQ12965 1108 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 NAA25Q14CX7 972 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 SEPT2Q15019 361 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 SLC39A14Q15043 492 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 TSNAXIP1Q2TAA8 658 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 PPP1R2P3Q6NXS1 205 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 NOP9Q86U38 636 aaKnown RBP9.47□□□□□ -0.89
PTCD3-201ENST00000254630 TTLL6Q8N841 843 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF653Q96CK0 615 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 IFT122Q9HBG6 1241 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.47□□□□□ -0.89
PTCD3-201ENST00000254630 BCAP29Q9UHQ4 241 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 SLC12A6Q9UHW9 1150 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 PNMA3Q9UL41 463 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 CPSF1Q10570 1443 aaKnown RBP9.47□□□□□ -0.89
PTCD3-201ENST00000254630 ECE2O60344 883 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 MARK3P27448 753 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 LMNB2Q03252 620 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 THAP9Q9H5L6 903 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 MAD1L1Q9Y6D9 718 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 PRR36Q9H6K5 1346 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 CYP2D7A0A087X1C5 515 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 H2AFZP0C0S5 128 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 H2AFVQ71UI9 128 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 CDKL2Q92772 493 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 PPP1R13BQ96KQ4 1090 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 GCNT4Q9P109 453 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 GSTA1P08263 222 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 CYP21A2P08686 494 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 GSTA2P09210 222 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 PHLDB2Q86SQ0 1253 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 BBS5Q8N3I7 341 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 CEP120Q8N960 986 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 OSBPL3Q9H4L5 887 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF148Q9UQR1 794 aa9.47□□□□□ -0.89
PTCD3-201ENST00000254630 CSPG5O95196 566 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 RAB44Q7Z6P3 723 aaPredicted RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 GSDMAQ96QA5 445 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 UBE2TQ9NPD8 197 aaPredicted RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 PLEKHG2Q9H7P9 1386 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 PLA2G4BP0C869 781 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 EEF1GP26641 437 aaKnown RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 HOXA13P31271 388 aaPredicted RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 CASP14P31944 242 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 KIF23Q02241 960 aaPredicted RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 ANKRD20A3Q5VUR7 823 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 SLC10A4Q96EP9 437 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 GCNAQ96QF7 691 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 RPF1Q9H9Y2 349 aaKnown RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 FEM1BQ9UK73 627 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 MADDQ8WXG6 1647 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 XPAP23025 273 aaPredicted RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 DDIT3P35638 169 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 PSMD2Q13200 908 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 PI16Q6UXB8 463 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 RAPH1Q70E73 1250 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 EEPD1Q7L9B9 569 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 SMYD4Q8IYR2 804 aaPredicted RBP9.46□□□□□ -0.89
PTCD3-201ENST00000254630 KCTD6Q8NC69 237 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 GDAP1L1Q96MZ0 367 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 PIM2Q9P1W9 311 aa9.46□□□□□ -0.89
PTCD3-201ENST00000254630 HEXIM1O94992 359 aaKnown RBP9.46□□□□□ -0.9
PTCD3-201ENST00000254630 MYL1P05976 194 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 TCP1P17987 556 aaKnown RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms