RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 HAUS3Q68CZ6 603 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 LARP4BQ92615 738 aaKnown RBP13.19□□□□□ -0.3
USHBP1-201ENST00000252597 NR1D1P20393 614 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 CTNNA1P35221 906 aaKnown RBP13.19□□□□□ -0.3
USHBP1-201ENST00000252597 SNAP25P60880 206 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 SELENOSQ9BQE4 189 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 PLAAQ9Y263 795 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 MYH10P35580 1976 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 USP17L5A8MUK1 530 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 GOLGA8KD6RF30 607 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 E9PMD0 336 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 PDE6BP35913 854 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 HDLBPQ00341 1268 aaKnown RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 MIIPQ5JXC2 388 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 CD248Q9HCU0 757 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 ITGB4P16144 1822 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 MYO5AQ9Y4I1 1855 aaKnown RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 BUB1BO60566 1050 aaPredicted RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 HNRNPH1P31943 449 aaKnown RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 GNAQP50148 359 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 CYP4A11Q02928 519 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 PAK2Q13177 524 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 MAN2A1Q16706 1144 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 KCNK18Q7Z418 384 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 TEX11Q8IYF3 940 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 FNBP4Q8N3X1 1017 aaPredicted RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 VIPAS39Q9H9C1 493 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 KBTBD4Q9NVX7 518 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 ARPP21Q9UBL0 812 aaPredicted RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 KIAA1024Q9UPX6 916 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 SFI1A8K8P3 1242 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 GNA11P29992 359 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 MMS22LQ6ZRQ5 1243 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 CCDC84Q86UT8 332 aaPredicted RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 C4orf32Q8N8J7 132 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 RDH13Q8NBN7 331 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 TLR10Q9BXR5 811 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 LUC7LQ9NQ29 371 aaKnown RBP13.18□□□□□ -0.3
USHBP1-201ENST00000252597 PCDHB13Q9Y5F0 798 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 PAPPAQ13219 1627 aa13.18□□□□□ -0.3
USHBP1-201ENST00000252597 SPATA31A5Q5VU36 1347 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 SPATA31A7Q8IWB4 1347 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 ERVV-1B6SEH8 477 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 SLC37A4O43826 429 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 USP8P40818 1118 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 RPS6KA1Q15418 735 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 TBC1D10BQ4KMP7 808 aaPredicted RBP13.17□□□□□ -0.3
USHBP1-201ENST00000252597 PARP10Q53GL7 1025 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 FAM83BQ5T0W9 1011 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 TMED8Q6PL24 325 aaPredicted RBP13.17□□□□□ -0.3
USHBP1-201ENST00000252597 SLC30A10Q6XR72 485 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 CPLX4Q7Z7G2 160 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 MYOCDQ8IZQ8 938 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 KIRREL3Q8IZU9 778 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 SETDB2Q96T68 719 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 CHORDC1Q9UHD1 332 aaPredicted RBP13.17□□□□□ -0.3
USHBP1-201ENST00000252597 A0A087X0T9 212 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 ANO9A1A5B4 782 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 TARSL2A2RTX5 802 aaKnown RBP13.17□□□□□ -0.3
USHBP1-201ENST00000252597 STXBP3O00186 592 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 RIMBP2O15034 1052 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 CLIC2O15247 247 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 FAM228BP0C875 321 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 SLC20A2Q08357 652 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 SF3B2Q13435 895 aaKnown RBP13.17□□□□□ -0.3
USHBP1-201ENST00000252597 UBE4AQ14139 1066 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 KRT71Q3SY84 523 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 AENQ8WTP8 325 aaKnown RBP13.17□□□□□ -0.3
USHBP1-201ENST00000252597 MAD2L2Q9UI95 211 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 GGT7Q9UJ14 662 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 PLAGL2Q9UPG8 496 aa13.17□□□□□ -0.3
USHBP1-201ENST00000252597 RAD51CO43502 376 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 NTSR2O95665 410 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 BAG3O95817 575 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 STAT3P40763 770 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 AARSP49588 968 aaKnown RBP eCLIP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 ASIC2Q16515 512 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 NBPF9Q3BBW0 867 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CABS1Q96KC9 395 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CDCA7Q9BWT1 371 aaPredicted RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 ATP8A2Q9NTI2 1148 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 PANK4Q9NVE7 773 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 BARHL2Q9NY43 387 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 NOVA2Q9UNW9 492 aaKnown RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 MYH2Q9UKX2 1941 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CAMTA2O94983 1202 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 FGFR1OPO95684 399 aaKnown RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 LSP1P33241 339 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 SLCO1A2P46721 670 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 IFNAR2P48551 515 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 SLC35G1Q2M3R5 365 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 INTS5Q6P9B9 1019 aaKnown RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CCDC121Q6ZUS5 278 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 KRT25Q7Z3Z0 450 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CCDC25Q86WR0 208 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CASKIN2Q8WXE0 1202 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 FGFBP2Q9BYJ0 223 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CELF4Q9BZC1 486 aaKnown RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 AMACRQ9UHK6 382 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms