RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 POTEIP0CG38 1075 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 SLC9A1P19634 815 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 FLT3P36888 993 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 POLR2FP61218 127 aaKnown RBP11.85□□□□□ -0.51
USP28-201ENST00000003302 EHHADHQ08426 723 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 POTEGQ6S5H5 508 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 POTEEQ6S8J3 1075 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 ANKS1AQ92625 1134 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 ELMO3Q96BJ8 720 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 DHTKD1Q96HY7 919 aaPredicted RBP11.85□□□□□ -0.51
USP28-201ENST00000003302 JMJD4Q9H9V9 463 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.85□□□□□ -0.51
USP28-201ENST00000003302 COPB2P35606 906 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 TDRD12Q587J7 1177 aaKnown RBP11.85□□□□□ -0.51
USP28-201ENST00000003302 ARSHQ5FYA8 562 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 FAM196AQ6ZSG2 479 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 C16orf86Q6ZW13 317 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 DAGLBQ8NCG7 672 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 FAM71BQ8TC56 605 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 MYO1AQ9UBC5 1043 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 NR2E1Q9Y466 385 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 ERLIN1O75477 346 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 PALMO75781 387 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 TBC1D5Q92609 795 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 NEUROG2Q9H2A3 272 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 ZHX3Q9H4I2 956 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 PSD3Q9NYI0 1048 aa11.85□□□□□ -0.51
USP28-201ENST00000003302 AARSP49588 968 aaKnown RBP eCLIP11.84□□□□□ -0.51
USP28-201ENST00000003302 GTF2IP78347 998 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 JAG1P78504 1218 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 TRIM14Q14142 442 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 ADGRF4Q8IZF3 695 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 IFT81Q8WYA0 676 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 PIK3R5Q8WYR1 880 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 ZIM3Q96PE6 472 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 DNAJC18Q9H819 358 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 SH3GLB2Q9NR46 395 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 COASYQ13057 564 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 ZCWPW2Q504Y3 356 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 EIF3JO75822 258 aaKnown RBP11.84□□□□□ -0.51
USP28-201ENST00000003302 SPRED3Q2MJR0 410 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 PRR5LQ6MZQ0 368 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 TPTE2Q6XPS3 522 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.84□□□□□ -0.512e-6■■■■■ 149.1
USP28-201ENST00000003302 CCNL1Q9UK58 526 aaPredicted RBP11.84□□□□□ -0.51
USP28-201ENST00000003302 ROBO3Q96MS0 1386 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 ZNF233A6NK53 670 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 DCDC2CA8MYV0 355 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 MED24O75448 989 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 MAGEA1P43355 309 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 CASP4P49662 377 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 IRAK1P51617 712 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 NAP1L1P55209 391 aaKnown RBP11.84□□□□□ -0.51
USP28-201ENST00000003302 TAF3Q5VWG9 929 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 NEDD1Q8NHV4 660 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 RBM46Q8TBY0 533 aaKnown RBP11.84□□□□□ -0.51
USP28-201ENST00000003302 SCFD1Q8WVM8 642 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 SPZ1Q9BXG8 430 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 DEF6Q9H4E7 631 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 KIAA1024Q9UPX6 916 aa11.84□□□□□ -0.51
USP28-201ENST00000003302 PCP11498 1178 aaKnown RBP11.83□□□□□ -0.52
USP28-201ENST00000003302 CYLC1P35663 651 aaPredicted RBP11.83□□□□□ -0.52
USP28-201ENST00000003302 SEC24CP53992 1094 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 DOK7Q18PE1 504 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 DPY19L2P1Q6NXN4 242 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 AFAP1L1Q8TED9 768 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 DAGLAQ9Y4D2 1042 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 LTBP4Q8N2S1 1624 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 TRAF5O00463 557 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 GUCY1A3Q02108 690 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 TCP10Q12799 353 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 NBPF9Q3BBW0 867 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 FAM83BQ5T0W9 1011 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 RAD54LQ92698 747 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 MTMR4Q9NYA4 1195 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 PCDHA2Q9Y5H9 948 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 GOLGA6BA6NDN3 693 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 ITGA4P13612 1032 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 PRPHP41219 470 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 CYP4A11Q02928 519 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 HSP90B2PQ58FF3 399 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 SV2BQ7L1I2 683 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 RIOX1Q9H6W3 641 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 GUCY2DQ02846 1103 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 GPS2Q13227 327 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 AP1M1Q9BXS5 423 aa11.83□□□□□ -0.52
USP28-201ENST00000003302 RPS6KA4O75676 772 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 KRT83P78385 493 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 MAP9Q49MG5 647 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 KLHL7Q8IXQ5 586 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 LSM14BQ9BX40 385 aaKnown RBP11.82□□□□□ -0.52
USP28-201ENST00000003302 EPB41L5Q9HCM4 733 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 GPR75-ASB3A0A0A6YYF3 556 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 TSR1Q2NL82 804 aaKnown RBP11.82□□□□□ -0.52
USP28-201ENST00000003302 PDXDC1Q6P996 788 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 UNC13DQ70J99 1090 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 KRT12Q99456 494 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 LIG3P49916 1009 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 LLGL1Q15334 1064 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 ADAT2Q7Z6V5 191 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms