RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 IL23AQ9NPF7 189 aa11.93□□□□□ -0.5
SCN1A-222ENST00000642141 CXXC1Q9P0U4 656 aaPredicted RBP11.93□□□□□ -0.5
SCN1A-222ENST00000642141 DDX41Q9UJV9 622 aaKnown RBP11.93□□□□□ -0.5
SCN1A-222ENST00000642141 MRVI1Q9Y6F6 885 aa11.93□□□□□ -0.5
SCN1A-222ENST00000642141 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.92□□□□□ -0.5
SCN1A-222ENST00000642141 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.92□□□□□ -0.5
SCN1A-222ENST00000642141 CCDC69A6NI79 296 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 GCOM1H8Y6P7 765 aaPredicted RBP11.92□□□□□ -0.5
SCN1A-222ENST00000642141 PLEKHA8P1O95397 391 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 FGBP02675 491 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 POLR2MP0CAP2 368 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 DNAJB2P25686 324 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 MCM5P33992 734 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 CENPQQ7L2Z9 268 aaPredicted RBP11.92□□□□□ -0.5
SCN1A-222ENST00000642141 CTCFLQ8NI51 663 aaPredicted RBP11.92□□□□□ -0.5
SCN1A-222ENST00000642141 GPKOWQ92917 476 aaPredicted RBP eCLIP11.92□□□□□ -0.5
SCN1A-222ENST00000642141 PDCD2LQ9BRP1 358 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 BCAS3Q9H6U6 928 aa11.92□□□□□ -0.5
SCN1A-222ENST00000642141 ZBBXA8MT70 800 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 SH2B2O14492 632 aaPredicted RBP11.91□□□□□ -0.5
SCN1A-222ENST00000642141 KPNA6O60684 536 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 RGS20O76081 388 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 MMP3P08254 477 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 ZNF286BP0CG31 522 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 RABGGTBP53611 331 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 GRIN2CQ14957 1233 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 PGM5Q15124 567 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 NECTIN1Q15223 517 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 PSRC1Q6PGN9 363 aaPredicted RBP11.91□□□□□ -0.5
SCN1A-222ENST00000642141 DHX37Q8IY37 1157 aaKnown RBP11.91□□□□□ -0.5
SCN1A-222ENST00000642141 SRBD1Q8N5C6 995 aaKnown RBP11.91□□□□□ -0.5
SCN1A-222ENST00000642141 TIFAQ96CG3 184 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 RRP36Q96EU6 259 aaKnown RBP11.91□□□□□ -0.5
SCN1A-222ENST00000642141 TCEANC2Q96MN5 208 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 ALG1Q9BT22 464 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 RTEL1Q9NZ71 1219 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 NOD1Q9Y239 953 aa11.91□□□□□ -0.5
SCN1A-222ENST00000642141 BAZ2BQ9UIF8 2168 aaKnown RBP11.91□□□□□ -0.5
SCN1A-222ENST00000642141 MYH6P13533 1939 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 SUPT20HL2P0C7V6 817 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 CASTP20810 708 aaKnown RBP11.9□□□□□ -0.5
SCN1A-222ENST00000642141 CCND2P30279 289 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 KIF5BP33176 963 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 SP2Q02086 613 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 PTGISQ16647 500 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 DGKDQ16760 1214 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 BMP2KLQ5H9B9 411 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 GDF6Q6KF10 455 aaPredicted RBP11.9□□□□□ -0.5
SCN1A-222ENST00000642141 NFRKBQ6P4R8 1299 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 USP17L6PQ6QN14 398 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 VSIG10LQ86VR7 867 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 HERVK_113Q902F9 699 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 KAT2BQ92831 832 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 VWCEQ96DN2 955 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 SEZ6LQ9BYH1 1024 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 PBX4Q9BYU1 374 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 MAF1Q9H063 256 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 ZNF576Q9H609 170 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 UNC80Q8N2C7 3258 aa11.9□□□□□ -0.5
SCN1A-222ENST00000642141 PRUNE2Q8WUY3 3088 aa11.9□□□□□ -0.51
SCN1A-222ENST00000642141 DLL1O00548 723 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 DDAH1O94760 285 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 GGPS1O95749 300 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 MYOGP15173 224 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 FOSL2P15408 326 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 ZNF200P98182 395 aaPredicted RBP11.89□□□□□ -0.51
SCN1A-222ENST00000642141 LAMC2Q13753 1193 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 RASIP1Q5U651 963 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 RPUSD2Q8IZ73 545 aaKnown RBP11.89□□□□□ -0.51
SCN1A-222ENST00000642141 RETREG2Q8NC44 543 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 MAFAQ8NHW3 353 aaPredicted RBP11.89□□□□□ -0.51
SCN1A-222ENST00000642141 TMEM87BQ96K49 555 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 SPATA33Q96N06 139 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 FTOQ9C0B1 505 aaKnown RBP eCLIP11.89□□□□□ -0.51
SCN1A-222ENST00000642141 HDAC6Q9UBN7 1215 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 SEC63Q9UGP8 760 aaKnown RBP11.89□□□□□ -0.51
SCN1A-222ENST00000642141 SLC12A7Q9Y666 1083 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 CHD9Q3L8U1 2897 aa11.89□□□□□ -0.51
SCN1A-222ENST00000642141 CDH23Q9H251 3354 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 IQCF3P0C7M6 154 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 CPA1P15085 419 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 PSEN2P49810 448 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 MRPS9P82933 396 aaKnown RBP11.88□□□□□ -0.51
SCN1A-222ENST00000642141 SP4Q02446 784 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 GHRHRQ02643 423 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 TRAF1Q13077 416 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 MFSD10Q14728 455 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 KIAA0753Q2KHM9 967 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 HSDL1Q3SXM5 330 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 CELF3Q5SZQ8 465 aaKnown RBP11.88□□□□□ -0.51
SCN1A-222ENST00000642141 MYSM1Q5VVJ2 828 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 MICU3Q86XE3 530 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 RASEFQ8IZ41 740 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 TMTC2Q8N394 836 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 C7orf31Q8N865 590 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 PPTC7Q8NI37 304 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 SMARCC2Q8TAQ2 1214 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 PPM1EQ8WY54 764 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 CCDC136Q96JN2 1154 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 CTAGE1Q96RT6 745 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms