RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZYG11AQ6WRX3 759 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CPLX4Q7Z7G2 160 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SLFN12Q8IYM2 578 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NLGN1Q8N2Q7 840 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC12Q8WUD4 166 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 C8orf48Q96LL4 319 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 DNAJC5Q9H3Z4 198 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SERHL2Q9H4I8 314 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PARVAQ9NVD7 372 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PARP2Q9UGN5 583 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NCKAP5LQ9HCH0 1330 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 GOLGA8CPA6NN73 597 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 H3BRJ5 948 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 THEGLP0DJG4 465 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 GPR162Q16538 588 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ANKDD1AQ495B1 522 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 RALYLQ86SE5 291 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PCGF5Q86SE9 256 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 VPS37DQ86XT2 251 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 LMBR1Q8WVP7 490 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NACC2Q96BF6 587 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 DPH5Q9H2P9 285 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 IFT80Q9P2H3 777 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 C9IYK1 514 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SCAMP2O15127 329 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SMPD2O60906 423 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PRKAR2AP13861 404 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 COTL1Q14019 142 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 RRS1Q15050 365 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SGO1Q5FBB7 561 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 APPL2Q8NEU8 664 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 RIN3Q8TB24 985 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PPP1R16BQ96T49 567 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 OLFM1Q99784 485 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 MALT1Q9UDY8 824 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 MTUS2Q5JR59 1369 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 KIAA2026Q5HYC2 2103 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 EEA1Q15075 1411 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 AKNAQ7Z591 1439 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CTAGE9A4FU28 777 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 MYL6BP14649 208 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 EAPPQ56P03 285 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 LPCAT2Q7L5N7 544 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 IFNL3Q8IZI9 196 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ABHD8Q96I13 439 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 POLKQ9UBT6 870 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 TMEM98Q9Y2Y6 226 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 RSPH10B2B2RC85 870 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 RSPH10BP0C881 870 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CCT8P50990 548 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PON2Q15165 354 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SWT1Q5T5J6 900 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PACS1Q6VY07 963 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 KRT25Q7Z3Z0 450 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 LRRC47Q8N1G4 583 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NPLOC4Q8TAT6 608 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SPIRE2Q8WWL2 714 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ZCCHC17Q9NP64 241 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 GINM1Q9NU53 330 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CROTQ9UKG9 612 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 DGKIO75912 1065 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CUL2Q13617 745 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 MAPRE1Q15691 268 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 HIBCHQ6NVY1 386 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 BNC2Q6ZN30 1099 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TLK2Q86UE8 772 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 GALNT13Q8IUC8 556 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 FAM133AQ8N9E0 248 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 OSCP1Q8WVF1 389 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 RIOK1Q9BRS2 568 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 RAD51BO15315 384 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 FDX1P10109 184 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TBX2Q13207 712 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 UROC1Q96N76 676 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PHF12Q96QT6 1004 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 MIS12Q9H081 205 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 WARS2Q9UGM6 360 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ITGB1BP2Q9UKP3 347 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 DMTF1Q9Y222 760 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ANKRD65E5RJM6 399 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 KRT86O43790 486 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 KRT9P35527 623 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SEPHS1P49903 392 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ARHGEF6Q15052 776 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CEP85Q6P2H3 762 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC149Q6ZUS6 474 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SENP2Q9HC62 589 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 HPCAL4Q9UM19 191 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CTAGE15A4D2H0 777 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CTAGE8P0CG41 777 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ZKSCAN1P17029 563 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SLC8A1P32418 973 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 DNAJC3Q13217 504 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TIGD6Q17RP2 521 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 C6orf183Q5T699 404 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 RAPH1Q70E73 1250 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CTAGE6Q86UF2 777 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CTAGE4Q8IX94 777 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PGBD3Q8N328 593 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms