RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SOGA1O94964 1423 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ACTN4O43707 911 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 EVI5O60447 810 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MX2P20592 715 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CASP6P55212 293 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PSMC1P62191 440 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SCGB2A2Q13296 93 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PPP1R7Q15435 360 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ZBTB8OSQ8IWT0 167 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ZCRB1Q8TBF4 217 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 UCMAQ8WVF2 138 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MAIP1Q8WWC4 291 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 IQCDQ96DY2 449 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ZFP42Q96MM3 310 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SARS2Q9NP81 518 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ARL15Q9NXU5 204 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FER1L5A0AVI2 2057 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 EIF4G3O43432 1585 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MAGEC1O60732 1142 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 LDHAP00338 332 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RHOXF2BP0C7M4 288 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 KRT5P13647 590 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 KPNA2P52292 529 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 IRX1P78414 480 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 KCTD2Q14681 263 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ARSJQ5FYB0 599 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ANKRD20A2Q5SQ80 823 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ANKRD20A3Q5VUR7 823 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ST13P4Q8IZP2 240 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PANK1Q8TE04 598 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 DPF3Q92784 378 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RHOXF2Q9BQY4 288 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 APOL6Q9BWW8 343 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PHTF1Q9UMS5 762 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 BCS1LQ9Y276 419 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 POLR2AP24928 1970 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FLT1P17948 1338 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 KRT75O95678 551 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 KRT8P05787 483 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 OAS2P29728 719 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 HIRAP54198 1017 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TNNC1P63316 161 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 NFIAQ12857 509 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RASGRF1Q13972 1273 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TFDP1Q14186 410 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 OLFML2BQ68BL8 750 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ERICH1Q86X53 443 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 NLGN1Q8N2Q7 840 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 KBTBD3Q8NAB2 608 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SYMPKQ92797 1274 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 BACH2Q9BYV9 841 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SIL1Q9H173 461 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 XPNPEP3Q9NQH7 507 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 hCG_2014768A0A024R1R8 64 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 BCRP11274 1271 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CYLC1P35663 651 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RIPPLY1Q0D2K3 151 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM14Q14142 442 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 DENND2CQ68D51 928 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ARMCX5Q6P1M9 558 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ASAP3Q8TDY4 903 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RIT1Q92963 219 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF274Q96GC6 653 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 INTS4Q96HW7 963 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM54Q9BYV2 358 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 UBA5Q9GZZ9 404 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FAM204AQ9H8W3 233 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PARVBQ9HBI1 364 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MED4Q9NPJ6 270 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SALL3Q9BXA9 1300 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CADPSQ9ULU8 1353 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 POLQO75417 2590 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 HMGXB3Q12766 1538 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RIF1Q5UIP0 2472 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP10A1A4S6 786 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RNASEH1O60930 286 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PTH1RQ03431 593 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MTA1Q13330 715 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ST13P5Q8NFI4 369 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SPON1Q9HCB6 807 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 EXOC1Q9NV70 894 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 THG1LQ9NWX6 298 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ZMYND8Q9ULU4 1186 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 OTOGLQ3ZCN5 2332 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 DOPEY1Q5JWR5 2465 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 NBNO60934 754 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MMP14P50281 582 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ANXA11P50995 505 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 GUCY1B3Q02153 619 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ANKRD20A4Q4UJ75 823 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC122Q5T0U0 273 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ANKRD20A1Q5TYW2 823 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM164Q5U3C3 297 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FAM196AQ6ZSG2 479 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 NSUN7Q8NE18 718 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 DIS3LQ8TF46 1054 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SKA2Q8WVK7 121 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 LRRC37BQ96QE4 947 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 BBS4Q96RK4 519 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SMARCAD1Q9H4L7 1026 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms