RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CASTP20810 708 aaKnown RBP17.56■□□□□ 0.4
SYNE2-228ENST00000639659 PDE1AP54750 535 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 ARHGAP1Q07960 439 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 GPATCH4Q5T3I0 446 aaKnown RBP17.56■□□□□ 0.4
SYNE2-228ENST00000639659 ARHGEF16Q5VV41 709 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 CCDC62Q6P9F0 684 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 CNKSR3Q6P9H4 555 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 SYTL5Q8TDW5 730 aaPredicted RBP17.56■□□□□ 0.4
SYNE2-228ENST00000639659 NSUN6Q8TEA1 469 aaKnown RBP17.56■□□□□ 0.4
SYNE2-228ENST00000639659 ESR2Q92731 530 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 TTC14Q96N46 770 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 LRFN3Q9BTN0 628 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 RNF41Q9H4P4 317 aaPredicted RBP17.56■□□□□ 0.4
SYNE2-228ENST00000639659 VAT1LQ9HCJ6 419 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 COL20A1Q9P218 1284 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 HDAC6Q9UBN7 1215 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 MYH6P13533 1939 aa17.56■□□□□ 0.4
SYNE2-228ENST00000639659 ABCB11O95342 1321 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 LPXNO60711 386 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 SNHG28P0DPA3 235 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 CKBP12277 381 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 PSEN2P49810 448 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 STXBP2Q15833 593 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 DGKDQ16760 1214 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 TMEM31Q5JXX7 168 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 PNMA1Q8ND90 353 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 KAT2BQ92831 832 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 RMDN3Q96TC7 470 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 KAT14Q9H8E8 782 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 MRVI1Q9Y6F6 885 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 KIAA1217Q5T5P2 1943 aa17.55■□□□□ 0.4
SYNE2-228ENST00000639659 NBNO60934 754 aa17.54■□□□□ 0.4
SYNE2-228ENST00000639659 MFSD10Q14728 455 aa17.54■□□□□ 0.4
SYNE2-228ENST00000639659 TCTN1Q2MV58 587 aa17.54■□□□□ 0.4
SYNE2-228ENST00000639659 DHX37Q8IY37 1157 aaKnown RBP17.54■□□□□ 0.4
SYNE2-228ENST00000639659 ADGRF4Q8IZF3 695 aa17.54■□□□□ 0.4
SYNE2-228ENST00000639659 CTAGE1Q96RT6 745 aa17.54■□□□□ 0.4
SYNE2-228ENST00000639659 GTF2IRD1Q9UHL9 959 aa17.54■□□□□ 0.4
SYNE2-228ENST00000639659 ZMYM6O95789 1325 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 KDM4AO75164 1064 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 CFBP00751 764 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 GPNMBQ14956 572 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 KIAA0753Q2KHM9 967 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 QRICH1Q2TAL8 776 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 SESTD1Q86VW0 696 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 IQCA1Q86XH1 822 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 MCF2L2Q86YR7 1114 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 KHSRPQ92945 711 aaKnown RBP eCLIP17.53■□□□□ 0.4
SYNE2-228ENST00000639659 TGS1Q96RS0 853 aaKnown RBP17.53■□□□□ 0.4
SYNE2-228ENST00000639659 KATNAL1Q9BW62 490 aa17.53■□□□□ 0.4
SYNE2-228ENST00000639659 ZNF213O14771 459 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 GJB5O95377 273 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 PCP11498 1178 aaKnown RBP17.52■□□□□ 0.4
SYNE2-228ENST00000639659 MYCLP12524 364 aaPredicted RBP17.52■□□□□ 0.4
SYNE2-228ENST00000639659 ZNF200P98182 395 aaPredicted RBP17.52■□□□□ 0.4
SYNE2-228ENST00000639659 IKBKEQ14164 716 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 ZNF618Q5T7W0 954 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 FBXO11Q86XK2 927 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 RGS22Q8NE09 1264 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 RAD9AQ99638 391 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 SUGCTQ9HAC7 445 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 MRPL11Q9Y3B7 192 aaKnown RBP17.52■□□□□ 0.4
SYNE2-228ENST00000639659 MYH7BA7E2Y1 1941 aa17.52■□□□□ 0.4
SYNE2-228ENST00000639659 SIP14410 1827 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 ABHD14A-ACY1A0A1B0GW23 586 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 LINC01553A4QN01 128 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 B4E1Z4 1266 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 PARNO95453 639 aaKnown RBP17.51■□□□□ 0.39
SYNE2-228ENST00000639659 SSTR3P32745 418 aaPredicted RBP17.51■□□□□ 0.39
SYNE2-228ENST00000639659 MFAP1P55081 439 aaKnown RBP17.51■□□□□ 0.39
SYNE2-228ENST00000639659 MYOCDQ8IZQ8 938 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 WNT8BQ93098 351 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 IWS1Q96ST2 819 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 LNPKQ9C0E8 428 aa17.51■□□□□ 0.39
SYNE2-228ENST00000639659 UBE2ZQ9H832 354 aaPredicted RBP17.51■□□□□ 0.39
SYNE2-228ENST00000639659 DDX41Q9UJV9 622 aaKnown RBP17.51■□□□□ 0.39
SYNE2-228ENST00000639659 LAMA4Q16363 1823 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 CXCL10P02778 98 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 NR3C2P08235 984 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 PARP1P09874 1014 aaKnown RBP17.5■□□□□ 0.39
SYNE2-228ENST00000639659 KCNA5P22460 613 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 PTK7Q13308 1070 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 LAMC2Q13753 1193 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 ASPRV1Q53RT3 343 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.5■□□□□ 0.39
SYNE2-228ENST00000639659 EP400NLQ6ZTU2 488 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 DGKHQ86XP1 1220 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 FBXO22Q8NEZ5 403 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 C17orf80Q9BSJ5 609 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 PXMP2Q9NR77 195 aa17.5■□□□□ 0.39
SYNE2-228ENST00000639659 EFCAB14O75071 495 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 EIF3JO75822 258 aaKnown RBP17.49■□□□□ 0.39
SYNE2-228ENST00000639659 F2P00734 622 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 THPOP40225 353 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 ERVK-21P61565 698 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 CWC27Q6UX04 472 aaKnown RBP17.49■□□□□ 0.39
SYNE2-228ENST00000639659 PPTC7Q8NI37 304 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 ZFP91Q96JP5 570 aaPredicted RBP17.49■□□□□ 0.39
SYNE2-228ENST00000639659 SPATA33Q96N06 139 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 ZSCAN10Q96SZ4 725 aaPredicted RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms