RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CCNYQ8ND76 341 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 UIMC1Q96RL1 719 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 RABEP2Q9H5N1 569 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 TMEM206Q9H813 350 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 KCNH3Q9ULD8 1083 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 MAP3K13O43283 966 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 ATICP31939 592 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 STX1BP61266 288 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 CDC42EP1Q00587 391 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 MCM6Q14566 821 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 EEPD1Q7L9B9 569 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 DCLK2Q8N568 766 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.65□□□□□ -1.34
SCN1A-217ENST00000637988 TMX3Q96JJ7 454 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 NUDCD1Q96RS6 583 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 LSM7Q9UK45 103 aaKnown RBP6.65□□□□□ -1.34
SCN1A-217ENST00000637988 KRT87PA6NCN2 255 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 RALAP11233 206 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 SKILP12757 684 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 ATXN3P54252 364 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-217ENST00000637988 AMPD2Q01433 879 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 KCNV1Q6PIU1 500 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 FGD4Q96M96 766 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 ACCSQ96QU6 501 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 BACH2Q9BYV9 841 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 GDPD2Q9HCC8 539 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 HACD3Q9P035 362 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 CDV3Q9UKY7 258 aaKnown RBP6.65□□□□□ -1.35
SCN1A-217ENST00000637988 PCDHB7Q9Y5E2 793 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 IPO5O00410 1097 aaKnown RBP6.65□□□□□ -1.35
SCN1A-217ENST00000637988 C21orf2O43822 256 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 RPS6KB1P23443 525 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 STXBP2Q15833 593 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 CFAP221Q4G0U5 840 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 PREPLQ4J6C6 727 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-217ENST00000637988 CCDC38Q502W7 563 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 SYDE2Q5VT97 1194 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 ANKRD20A3Q5VUR7 823 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 TRIM42Q8IWZ5 723 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 ALKBH8Q96BT7 664 aaKnown RBP6.65□□□□□ -1.35
SCN1A-217ENST00000637988 CUEDC2Q9H467 287 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 LZTFL1Q9NQ48 299 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 MAD1L1Q9Y6D9 718 aa6.65□□□□□ -1.35
SCN1A-217ENST00000637988 TROVE2P10155 538 aaKnown RBP eCLIP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 NR1H3Q13133 447 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 RPS6KA1Q15418 735 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 KYAT1Q16773 422 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MYSM1Q5VVJ2 828 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ANGPTL8Q6UXH0 198 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 RNF207Q6ZRF8 634 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 PPM1KQ8N3J5 372 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 PNMA1Q8ND90 353 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 RPGRIP1Q96KN7 1286 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 RGL1Q9NZL6 768 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ADAMTS12P58397 1594 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 POLR3AO14802 1390 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 GNGT2O14610 69 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 IL6STP40189 918 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MYL5Q02045 173 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 HDAC1Q13547 482 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 NAA25Q14CX7 972 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 RFX6Q8HWS3 928 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SCN4BQ8IWT1 228 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 NELFCDQ8IXH7 590 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 BLIDQ8IZY5 108 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 IGSF22Q8N9C0 903 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 KCTD6Q8NC69 237 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 PDZD8Q8NEN9 1154 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 NELFBQ8WX92 580 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SCG3Q8WXD2 468 aaKnown RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 WRNIP1Q96S55 665 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 BAG1Q99933 345 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 COA1Q9GZY4 146 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SFMBT1Q9UHJ3 866 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 DNAI1Q9UI46 699 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 LAD1O00515 517 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 HUS1O60921 280 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 RARBP10826 455 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 TECP42680 631 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 CHRNDQ07001 517 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ALCAMQ13740 583 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 CCDC157Q569K6 752 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 GIMAP6Q6P9H5 292 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MRPL50Q8N5N7 158 aaKnown RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 BEST2Q8NFU1 509 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 PBXIP1Q96AQ6 731 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.64□□□□□ -1.353e-8■□□□□ 9.3
SCN1A-217ENST00000637988 MAGEB5Q9BZ81 275 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 AFF2P51816 1311 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SETSIPP0DME0 302 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MYL7Q01449 175 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SNAPC2Q13487 334 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ANO1Q5XXA6 986 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SKA1Q96BD8 255 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ASIC4Q96FT7 647 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 OTUB1Q96FW1 271 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 TCEANC2Q96MN5 208 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 LSM14BQ9BX40 385 aaKnown RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 DRC3Q9H069 523 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms