RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 NFIBO00712 420 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 NCK2O43639 380 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 GFRA3O60609 400 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 TSPY3P0CV98 308 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 TSPY8P0CW00 308 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 TXNP10599 105 aaKnown RBP19.31■□□□□ 0.68
CLN3-264ENST00000637985 EDNRBP24530 442 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 GPM6BQ13491 265 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 CTC1Q2NKJ3 1217 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 KAT2BQ92831 832 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 DCTPP1Q9H773 170 aa19.31■□□□□ 0.68
CLN3-264ENST00000637985 EPB41L4AQ9HCS5 686 aaPredicted RBP19.31■□□□□ 0.68
CLN3-264ENST00000637985 PTPRZ1P23471 2315 aaPredicted RBP19.3■□□□□ 0.68
CLN3-264ENST00000637985 PDE4DQ08499 809 aa19.3■□□□□ 0.68
CLN3-264ENST00000637985 MBTPS1Q14703 1052 aa19.3■□□□□ 0.68
CLN3-264ENST00000637985 PBXIP1Q96AQ6 731 aa19.3■□□□□ 0.68
CLN3-264ENST00000637985 GTF2IRD1Q9UHL9 959 aa19.3■□□□□ 0.68
CLN3-264ENST00000637985 PTPDC1A2A3K4 754 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 SMARCA5O60264 1052 aaPredicted RBP19.29■□□□□ 0.68
CLN3-264ENST00000637985 LGR5O75473 907 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 ARIH2O95376 493 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 AMHP03971 560 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 TFAP4Q01664 338 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 TRIM71Q2Q1W2 868 aaKnown RBP19.29■□□□□ 0.68
CLN3-264ENST00000637985 SLC30A10Q6XR72 485 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 TRIM67Q6ZTA4 783 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 RPAINQ86UA6 219 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 AFG1LQ8WV93 481 aa19.29■□□□□ 0.68
CLN3-264ENST00000637985 RANBP17Q9H2T7 1088 aaKnown RBP19.29■□□□□ 0.68
CLN3-264ENST00000637985 ALG13Q9NP73 1137 aaKnown RBP19.29■□□□□ 0.68
CLN3-264ENST00000637985 TMEM221A6NGB7 291 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 M0R296 226 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 MBTPS2O43462 519 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 MMP3P08254 477 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 TDO2P48775 406 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 ZNF618Q5T7W0 954 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 TMEM192Q8IY95 271 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 MYOCDQ8IZQ8 938 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 OSBP2Q969R2 916 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 MYO15AQ9UKN7 3530 aa19.28■□□□□ 0.68
CLN3-264ENST00000637985 CALML3P27482 149 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 DLX2Q07687 328 aaPredicted RBP19.27■□□□□ 0.68
CLN3-264ENST00000637985 PTK7Q13308 1070 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 CCDC62Q6P9F0 684 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 RASGRP2Q7LDG7 609 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 FBXO11Q86XK2 927 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 CLEC4DQ8WXI8 215 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 WNT8BQ93098 351 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 MPHOSPH6Q99547 160 aaKnown RBP19.27■□□□□ 0.68
CLN3-264ENST00000637985 ECHDC1Q9NTX5 307 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 HDAC6Q9UBN7 1215 aa19.27■□□□□ 0.68
CLN3-264ENST00000637985 KMT2EQ8IZD2 1858 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 PDE4BQ07343 736 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 CLUL1Q15846 466 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 RNF207Q6ZRF8 634 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 SUGP1Q8IWZ8 645 aaKnown RBP19.26■□□□□ 0.67
CLN3-264ENST00000637985 DBF4BQ8NFT6 615 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 DNERQ8NFT8 737 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 GPATCH3Q96I76 525 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 COL4A6Q14031 1691 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 NLRC5Q86WI3 1866 aa19.26■□□□□ 0.67
CLN3-264ENST00000637985 EMSYQ7Z589 1322 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 ATG2AQ2TAZ0 1938 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 GNAT2P19087 354 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 CASTP20810 708 aaKnown RBP19.25■□□□□ 0.67
CLN3-264ENST00000637985 RRP1P56182 461 aaKnown RBP19.25■□□□□ 0.67
CLN3-264ENST00000637985 RPS6P62753 249 aaKnown RBP19.25■□□□□ 0.67
CLN3-264ENST00000637985 SMAD4Q13485 552 aaKnown RBP19.25■□□□□ 0.67
CLN3-264ENST00000637985 PPP4R3BQ5MIZ7 849 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 BTNL9Q6UXG8 535 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 FBXL6Q8N531 539 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 C7orf31Q8N865 590 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 TOP1MTQ969P6 601 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 YME1L1Q96TA2 773 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 FAM86C1Q9NVL1 165 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 STX8Q9UNK0 236 aa19.25■□□□□ 0.67
CLN3-264ENST00000637985 STXBP3O00186 592 aa19.24■□□□□ 0.67
CLN3-264ENST00000637985 GPAA1O43292 621 aa19.24■□□□□ 0.67
CLN3-264ENST00000637985 ARHGAP1Q07960 439 aa19.24■□□□□ 0.67
CLN3-264ENST00000637985 HYAL1Q12794 435 aa19.24■□□□□ 0.67
CLN3-264ENST00000637985 IFNL3Q8IZI9 196 aa19.24■□□□□ 0.67
CLN3-264ENST00000637985 APPBP2Q92624 585 aa19.24■□□□□ 0.67
CLN3-264ENST00000637985 IL17RBQ9NRM6 502 aa19.24■□□□□ 0.67
CLN3-264ENST00000637985 DCHS1Q96JQ0 3298 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 RALGAPA2Q2PPJ7 1873 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 B4DLN1 442 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 PATL2C9JE40 543 aaKnown RBP19.23■□□□□ 0.67
CLN3-264ENST00000637985 GH1P01241 217 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 APPP05067 770 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 SLC16A2P36021 539 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 MRPL12P52815 198 aaKnown RBP19.23■□□□□ 0.67
CLN3-264ENST00000637985 ZXDAP98168 799 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 PLEKHG4Q58EX7 1191 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 TTBK2Q6IQ55 1244 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 PCDHB15Q9Y5E8 787 aa19.23■□□□□ 0.67
CLN3-264ENST00000637985 RIF1Q5UIP0 2472 aaKnown RBP19.23■□□□□ 0.67
CLN3-264ENST00000637985 HAS3O00219 553 aa19.22■□□□□ 0.67
CLN3-264ENST00000637985 TBX10O75333 385 aa19.22■□□□□ 0.67
CLN3-264ENST00000637985 PSEN2P49810 448 aa19.22■□□□□ 0.67
CLN3-264ENST00000637985 DGKDQ16760 1214 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms