RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 STXBP2Q15833 593 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 LRRC8DQ7L1W4 858 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 SESTD1Q86VW0 696 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 TICAM2Q86XR7 235 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 DHX38Q92620 1227 aaKnown RBP22.69■■□□□ 1.22
CLN3-262ENST00000637699 HLA-CQ95604 372 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 CRBNQ96SW2 442 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 RMDN3Q96TC7 470 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 RBAK-RBAKDNI3L0D1 243 aa22.68■■□□□ 1.22
CLN3-262ENST00000637699 ZNF213O14771 459 aa22.68■■□□□ 1.22
CLN3-262ENST00000637699 LPXNO60711 386 aa22.68■■□□□ 1.22
CLN3-262ENST00000637699 MCF2L2Q86YR7 1114 aa22.68■■□□□ 1.22
CLN3-262ENST00000637699 IWS1Q96ST2 819 aa22.68■■□□□ 1.22
CLN3-262ENST00000637699 KAT14Q9H8E8 782 aa22.68■■□□□ 1.22
CLN3-262ENST00000637699 VAT1LQ9HCJ6 419 aa22.68■■□□□ 1.22
CLN3-262ENST00000637699 PTPRSQ13332 1948 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 DHX16O60231 1041 aaKnown RBP22.67■■□□□ 1.22
CLN3-262ENST00000637699 KDM4AO75164 1064 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 CKBP12277 381 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 EIF2AK2P19525 551 aaKnown RBP22.67■■□□□ 1.22
CLN3-262ENST00000637699 MFAP1P55081 439 aaKnown RBP22.67■■□□□ 1.22
CLN3-262ENST00000637699 RRP1P56182 461 aaKnown RBP22.67■■□□□ 1.22
CLN3-262ENST00000637699 DEFB103AP81534 67 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 DGKDQ16760 1214 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 QRICH1Q2TAL8 776 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 ARHGEF16Q5VV41 709 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 IQCA1Q86XH1 822 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 C7orf31Q8N865 590 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 ALG1Q9BT22 464 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 LNPKQ9C0E8 428 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 HDAC6Q9UBN7 1215 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 GTF2IRD1Q9UHL9 959 aa22.67■■□□□ 1.22
CLN3-262ENST00000637699 DDX41Q9UJV9 622 aaKnown RBP22.67■■□□□ 1.22
CLN3-262ENST00000637699 NBNO60934 754 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 SDSP20132 328 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 PSEN2P49810 448 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 HDAC1Q13547 482 aaPredicted RBP22.66■■□□□ 1.22
CLN3-262ENST00000637699 TCTN1Q2MV58 587 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 CNKSR3Q6P9H4 555 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 FBXO11Q86XK2 927 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 GDPD5Q8WTR4 605 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 MAF1Q9H063 256 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 EPHX3Q9H6B9 360 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 MTUS1Q9ULD2 1270 aa22.66■■□□□ 1.22
CLN3-262ENST00000637699 MRPL11Q9Y3B7 192 aaKnown RBP22.66■■□□□ 1.22
CLN3-262ENST00000637699 B4E1Z4 1266 aa22.65■■□□□ 1.22
CLN3-262ENST00000637699 PLA2G5P39877 138 aa22.65■■□□□ 1.22
CLN3-262ENST00000637699 ASPRV1Q53RT3 343 aa22.65■■□□□ 1.22
CLN3-262ENST00000637699 CCDC178Q5BJE1 867 aa22.65■■□□□ 1.22
CLN3-262ENST00000637699 FAM122AQ96E09 287 aa22.65■■□□□ 1.22
CLN3-262ENST00000637699 ZSCAN10Q96SZ4 725 aaPredicted RBP22.65■■□□□ 1.22
CLN3-262ENST00000637699 MRVI1Q9Y6F6 885 aa22.65■■□□□ 1.22
CLN3-262ENST00000637699 KIAA1217Q5T5P2 1943 aa22.65■■□□□ 1.22
CLN3-262ENST00000637699 EIF3JO75822 258 aaKnown RBP22.64■■□□□ 1.21
CLN3-262ENST00000637699 PARNO95453 639 aaKnown RBP22.64■■□□□ 1.21
CLN3-262ENST00000637699 CFBP00751 764 aa22.64■■□□□ 1.21
CLN3-262ENST00000637699 CXCL10P02778 98 aa22.64■■□□□ 1.21
CLN3-262ENST00000637699 ZNF286BP0CG31 522 aa22.64■■□□□ 1.21
CLN3-262ENST00000637699 RBL2Q08999 1139 aa22.64■■□□□ 1.21
CLN3-262ENST00000637699 JMJD4Q9H9V9 463 aa22.64■■□□□ 1.21
CLN3-262ENST00000637699 PXMP2Q9NR77 195 aa22.64■■□□□ 1.21
CLN3-262ENST00000637699 ABHD14A-ACY1A0A1B0GW23 586 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 SORBS3O60504 671 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 NR3C2P08235 984 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 PARP1P09874 1014 aaKnown RBP22.63■■□□□ 1.21
CLN3-262ENST00000637699 LAMC2Q13753 1193 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 MFSD10Q14728 455 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 KIAA0753Q2KHM9 967 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 FAM117BQ6P1L5 589 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 CWC27Q6UX04 472 aaKnown RBP22.63■■□□□ 1.21
CLN3-262ENST00000637699 DHX37Q8IY37 1157 aaKnown RBP22.63■■□□□ 1.21
CLN3-262ENST00000637699 ENAHQ8N8S7 591 aaPredicted RBP22.63■■□□□ 1.21
CLN3-262ENST00000637699 ANKS1AQ92625 1134 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 EMID1Q96A84 441 aaPredicted RBP22.63■■□□□ 1.21
CLN3-262ENST00000637699 RAD9AQ99638 391 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 KATNAL1Q9BW62 490 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 ZSWIM5Q9P217 1185 aa22.63■■□□□ 1.21
CLN3-262ENST00000637699 COL4A4P53420 1690 aaPredicted RBP22.62■■□□□ 1.21
CLN3-262ENST00000637699 GJB5O95377 273 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 ZNF200P98182 395 aaPredicted RBP22.62■■□□□ 1.21
CLN3-262ENST00000637699 PTK7Q13308 1070 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 IKBKEQ14164 716 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 ZNF618Q5T7W0 954 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 B4GALNT3Q6L9W6 998 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 PPTC7Q8NI37 304 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 WNT8BQ93098 351 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 SUGCTQ9HAC7 445 aa22.62■■□□□ 1.21
CLN3-262ENST00000637699 MYH6P13533 1939 aa22.61■■□□□ 1.21
CLN3-262ENST00000637699 HAS3O00219 553 aa22.61■■□□□ 1.21
CLN3-262ENST00000637699 F2P00734 622 aa22.61■■□□□ 1.21
CLN3-262ENST00000637699 MYCLP12524 364 aaPredicted RBP22.61■■□□□ 1.21
CLN3-262ENST00000637699 TGS1Q96RS0 853 aaKnown RBP22.61■■□□□ 1.21
CLN3-262ENST00000637699 LRFN3Q9BTN0 628 aa22.61■■□□□ 1.21
CLN3-262ENST00000637699 LMCD1Q9NZU5 365 aa22.61■■□□□ 1.21
CLN3-262ENST00000637699 LINC01553A4QN01 128 aa22.6■■□□□ 1.21
CLN3-262ENST00000637699 NT5C2P49902 561 aa22.6■■□□□ 1.21
CLN3-262ENST00000637699 ERVK-21P61565 698 aa22.6■■□□□ 1.21
CLN3-262ENST00000637699 TRIM71Q2Q1W2 868 aaKnown RBP22.6■■□□□ 1.21
CLN3-262ENST00000637699 TRAF7Q6Q0C0 670 aa22.6■■□□□ 1.21
CLN3-262ENST00000637699 DIAPH3Q9NSV4 1193 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms