RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 SAMSN1Q9NSI8 373 aaKnown RBP12.89□□□□□ -0.35
CLN6-217ENST00000636964 FER1L6Q2WGJ9 1857 aa12.89□□□□□ -0.35
CLN6-217ENST00000636964 POTEMA6NI47 508 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 HOXA13P31271 388 aaPredicted RBP12.88□□□□□ -0.35
CLN6-217ENST00000636964 FKBP1CQ5VVH2 108 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 RINLQ6ZS11 566 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 TRIML1Q8N9V2 468 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 KIFC2Q96AC6 838 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 GSDMAQ96QA5 445 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 P2RX7Q99572 595 aaKnown RBP12.88□□□□□ -0.35
CLN6-217ENST00000636964 PGAP2Q9UHJ9 254 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 TMX2Q9Y320 296 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 COL2A1P02458 1487 aaPredicted RBP12.88□□□□□ -0.35
CLN6-217ENST00000636964 SMCHD1A6NHR9 2005 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 MARCH6O60337 910 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 UBASH3AP57075 661 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 MUM1L1Q5H9M0 696 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 CCDC174Q6PII3 467 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 TMC6Q7Z403 805 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 MTMR9Q96QG7 549 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 CCSER1Q9C0I3 900 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 EPC1Q9H2F5 836 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 DDX25Q9UHL0 483 aaKnown RBP12.88□□□□□ -0.35
CLN6-217ENST00000636964 MEIS2O14770 477 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 GTPBP6O43824 516 aaPredicted RBP12.88□□□□□ -0.35
CLN6-217ENST00000636964 STAT2P52630 851 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 DGKZQ13574 1117 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 FBXO28Q9NVF7 368 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 FZD1Q9UP38 647 aa12.88□□□□□ -0.35
CLN6-217ENST00000636964 ARHGAP29Q52LW3 1261 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 DNAJC21Q5F1R6 531 aaKnown RBP12.87□□□□□ -0.35
CLN6-217ENST00000636964 REXO1L1PQ8IX06 675 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 MMTAG2Q9BU76 263 aaKnown RBP12.87□□□□□ -0.35
CLN6-217ENST00000636964 LRWD1Q9UFC0 647 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 DACH1Q9UI36 760 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 UPF1Q92900 1129 aaKnown RBP eCLIP12.87□□□□□ -0.351e-7■■■■■ 31.9
CLN6-217ENST00000636964 PPP1R13BQ96KQ4 1090 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 NUDT12Q9BQG2 462 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 ANO3Q9BYT9 981 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 GOPCQ9HD26 462 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 HACL1Q9UJ83 578 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 GDAQ9Y2T3 454 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 ZNF541Q9H0D2 1346 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 BRCA1P38398 1863 aaKnown RBP12.87□□□□□ -0.35
CLN6-217ENST00000636964 PPP1R3GB7ZBB8 358 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 RPN1P04843 607 aaKnown RBP12.87□□□□□ -0.35
CLN6-217ENST00000636964 ZNF280AP59817 542 aaPredicted RBP12.87□□□□□ -0.35
CLN6-217ENST00000636964 TBC1D5Q92609 795 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 TEPSINQ96N21 525 aa12.87□□□□□ -0.35
CLN6-217ENST00000636964 PYM1Q9BRP8 204 aaKnown RBP12.87□□□□□ -0.35
CLN6-217ENST00000636964 PCNTO95613 3336 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 TBC1D12O60347 775 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 FCHSD1Q86WN1 690 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 IGSF22Q8N9C0 903 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 ENOX1Q8TC92 643 aaKnown RBP12.86□□□□□ -0.35
CLN6-217ENST00000636964 ZNF341Q9BYN7 854 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 CTNND2Q9UQB3 1225 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 MYH7BA7E2Y1 1941 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 ARHGAP27Q6ZUM4 889 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 HAS1Q92839 578 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 AK8Q96MA6 479 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 VCPKMTQ9H867 229 aa12.86□□□□□ -0.35
CLN6-217ENST00000636964 FZD9O00144 591 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 MYO1CO00159 1063 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 OPLAHO14841 1288 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 NBPF12Q5TAG4 269 aaPredicted RBP12.85□□□□□ -0.35
CLN6-217ENST00000636964 BTNL9Q6UXG8 535 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 DEFB129Q9H1M3 183 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.85□□□□□ -0.352e-8■■■□□ 18
CLN6-217ENST00000636964 PHF20L1A8MW92 1017 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 TBC1D8O95759 1140 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 TMEM266Q2M3C6 531 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 PPP4R3AQ6IN85 833 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 C10orf67Q8IYJ2 551 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 BORCS6Q96GS4 357 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 CFBP00751 764 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 ASNSP08243 561 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 RPS12P25398 132 aaKnown RBP12.85□□□□□ -0.35
CLN6-217ENST00000636964 ZKSCAN8Q15776 578 aaPredicted RBP12.85□□□□□ -0.35
CLN6-217ENST00000636964 KIF4BQ2VIQ3 1234 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 ARMCX5Q6P1M9 558 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 CALML4Q96GE6 196 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 KBTBD4Q9NVX7 518 aa12.85□□□□□ -0.35
CLN6-217ENST00000636964 ARFGEF1Q9Y6D6 1849 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 ERCC5P28715 1186 aaPredicted RBP12.84□□□□□ -0.35
CLN6-217ENST00000636964 GRB10Q13322 594 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 PCDHA12Q9UN75 941 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 SYNRGQ9UMZ2 1314 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 SPDYE3A6NKU9 549 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 INPP5BP32019 993 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 GOLGA8FQ08AF8 430 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 GOLGA8DPQ0D2H9 430 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 TNFAIP1Q13829 316 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 PRR16Q569H4 304 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 DNAJC14Q6Y2X3 702 aaPredicted RBP12.84□□□□□ -0.35
CLN6-217ENST00000636964 SNX29Q8TEQ0 813 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 CDK5RAP3Q96JB5 506 aa12.84□□□□□ -0.35
CLN6-217ENST00000636964 PRCPP42785 496 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 FXR2P51116 673 aaKnown RBP eCLIP12.83□□□□□ -0.35
CLN6-217ENST00000636964 UBXN2AP68543 259 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms