RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 HAUS7Q99871 368 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 LOC102724159A0A0B4J2E5 919 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 ZNF316A6NFI3 1004 aaPredicted RBP17.26■□□□□ 0.35
CLN3-249ENST00000636685 STXBP3O00186 592 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 LGR5O75473 907 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 ARIH2O95376 493 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 AMHP03971 560 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 ICAM1P05362 532 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 CALML3P27482 149 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 PWP2Q15269 919 aaKnown RBP17.26■□□□□ 0.35
CLN3-249ENST00000636685 PKN1Q16512 942 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 CTC1Q2NKJ3 1217 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 HSP90AB4PQ58FF6 505 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 ZNF618Q5T7W0 954 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 FBXL6Q8N531 539 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 AFG1LQ8WV93 481 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 ATOH1Q92858 354 aaPredicted RBP17.26■□□□□ 0.35
CLN3-249ENST00000636685 WNT8BQ93098 351 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 PLIN4Q96Q06 1357 aa17.26■□□□□ 0.35
CLN3-249ENST00000636685 TSPY3P0CV98 308 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 TSPY8P0CW00 308 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 RLBP1P12271 317 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 ATP5JP18859 108 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 PDE4BQ07343 736 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 HYAL1Q12794 435 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 MKRN4PQ13434 485 aaPredicted RBP17.25■□□□□ 0.35
CLN3-249ENST00000636685 SMAD4Q13485 552 aaKnown RBP17.25■□□□□ 0.35
CLN3-249ENST00000636685 TRIM71Q2Q1W2 868 aaKnown RBP17.25■□□□□ 0.35
CLN3-249ENST00000636685 RCSD1Q6JBY9 416 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 GIMAP6Q6P9H5 292 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 FBXO11Q86XK2 927 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 EPB41L4AQ9HCS5 686 aaPredicted RBP17.25■□□□□ 0.35
CLN3-249ENST00000636685 HDAC6Q9UBN7 1215 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 GTF2IRD1Q9UHL9 959 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 DCHS1Q96JQ0 3298 aa17.25■□□□□ 0.35
CLN3-249ENST00000636685 DMDP11532 3685 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 NCK2O43639 380 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 MMP3P08254 477 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 VCPP55072 806 aaKnown RBP17.24■□□□□ 0.35
CLN3-249ENST00000636685 ZXDAP98168 799 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 TFAP4Q01664 338 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 ZSCAN25Q6NSZ9 544 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 DBF4BQ8NFT6 615 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 KIF1BPQ96EK5 621 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 YME1L1Q96TA2 773 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 ZNF287Q9HBT7 754 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 MTMR7Q9Y216 660 aa17.24■□□□□ 0.35
CLN3-249ENST00000636685 COL4A6Q14031 1691 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 TBX10O75333 385 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 UPP2O95045 317 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 EDNRBP24530 442 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 GTF2F1P35269 517 aaKnown RBP eCLIP17.23■□□□□ 0.35
CLN3-249ENST00000636685 TDO2P48775 406 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 PTK7Q13308 1070 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 FTSJ3Q8IY81 847 aaKnown RBP17.23■□□□□ 0.35
CLN3-249ENST00000636685 C7orf31Q8N865 590 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 ALG1Q9BT22 464 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 RANBP17Q9H2T7 1088 aaKnown RBP17.23■□□□□ 0.35
CLN3-249ENST00000636685 MYH7BA7E2Y1 1941 aa17.23■□□□□ 0.35
CLN3-249ENST00000636685 LINC01565O15544 149 aa17.22■□□□□ 0.35
CLN3-249ENST00000636685 ZNF200P98182 395 aaPredicted RBP17.22■□□□□ 0.35
CLN3-249ENST00000636685 RNF207Q6ZRF8 634 aa17.22■□□□□ 0.35
CLN3-249ENST00000636685 CHST3Q7LGC8 479 aa17.22■□□□□ 0.35
CLN3-249ENST00000636685 CLEC4DQ8WXI8 215 aa17.22■□□□□ 0.35
CLN3-249ENST00000636685 IGFLR1Q9H665 355 aa17.22■□□□□ 0.35
CLN3-249ENST00000636685 CD207Q9UJ71 328 aa17.22■□□□□ 0.35
CLN3-249ENST00000636685 KIAA1217Q5T5P2 1943 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 SLC16A2P36021 539 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 PSEN2P49810 448 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 ARHGAP1Q07960 439 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 LY6KQ17RY6 165 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 TTBK2Q6IQ55 1244 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 CCDC62Q6P9F0 684 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 ASCL5Q7RTU5 278 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 OSBP2Q969R2 916 aa17.21■□□□□ 0.35
CLN3-249ENST00000636685 H0Y858 1186 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 GRM6O15303 877 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 CSPG5O95196 566 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 GH1P01241 217 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 CASTP20810 708 aaKnown RBP17.2■□□□□ 0.34
CLN3-249ENST00000636685 CTNNB1P35222 781 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 RPS6P62753 249 aaKnown RBP17.2■□□□□ 0.34
CLN3-249ENST00000636685 CCDC96Q2M329 555 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 PLEKHG4Q58EX7 1191 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 TOP1MTQ969P6 601 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 MPHOSPH6Q99547 160 aaKnown RBP17.2■□□□□ 0.34
CLN3-249ENST00000636685 TLR9Q9NR96 1032 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 STX8Q9UNK0 236 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 EMSYQ7Z589 1322 aa17.2■□□□□ 0.34
CLN3-249ENST00000636685 CACNA1BQ00975 2339 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 NMT2O60551 498 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 APPP05067 770 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 AVPR2P30518 371 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 HIC1Q14526 733 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 MFSD10Q14728 455 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 ERMP1Q7Z2K6 904 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 IRF2BPLQ9H1B7 796 aa17.19■□□□□ 0.34
CLN3-249ENST00000636685 RSPH10B2B2RC85 870 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 LOC730098B7Z3J9 87 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 GPAA1O43292 621 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms