RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RASGRP4Q8TDF6 673 aa21.84■■□□□ 1.09
SQSTM1-216ENST00000626660 PGBD1Q96JS3 809 aa21.84■■□□□ 1.09
SQSTM1-216ENST00000626660 KATNBL1Q9H079 304 aa21.84■■□□□ 1.09
SQSTM1-216ENST00000626660 GJB4Q9NTQ9 266 aa21.84■■□□□ 1.09
SQSTM1-216ENST00000626660 STAM2O75886 525 aa21.83■■□□□ 1.09
SQSTM1-216ENST00000626660 SAFBQ15424 915 aaKnown RBP eCLIP21.83■■□□□ 1.09
SQSTM1-216ENST00000626660 CCDC144BQ3MJ40 725 aa21.83■■□□□ 1.09
SQSTM1-216ENST00000626660 INTS4Q96HW7 963 aaKnown RBP21.83■■□□□ 1.09
SQSTM1-216ENST00000626660 PAK6Q9NQU5 681 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-216ENST00000626660 DDX20Q9UHI6 824 aaKnown RBP21.83■■□□□ 1.09
SQSTM1-216ENST00000626660 MMP1P03956 469 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 HSP90AA1P07900 732 aaKnown RBP21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 GJB1P08034 283 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 KRT2P35908 639 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 SREBF1P36956 1147 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 IQSEC1Q6DN90 963 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 KRT25Q7Z3Z0 450 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 SCFD2Q8WU76 684 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 DEFB118Q96PH6 123 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 MYH7BA7E2Y1 1941 aa21.82■■□□□ 1.08
SQSTM1-216ENST00000626660 ADAMTS3O15072 1205 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 RARBP10826 455 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 GUCY1B3Q02153 619 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 TNFAIP2Q03169 654 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 NPY5RQ15761 445 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 GNPTABQ3T906 1256 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 TAPT1Q6NXT6 567 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 SEPT14Q6ZU15 432 aa21.81■■□□□ 1.08
SQSTM1-216ENST00000626660 CCDC194A0A1B0GVG4 234 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 ADCYAP1R1P41586 468 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 ARHGAP4P98171 946 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 TTLL4Q14679 1199 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 NONOQ15233 471 aaKnown RBP eCLIP21.8■■□□□ 1.081e-8■■■■□ 24.3
SQSTM1-216ENST00000626660 NLRX1Q86UT6 975 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 DIS3L2Q8IYB7 885 aaKnown RBP21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 FBXO18Q8NFZ0 1043 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 WDR11Q9BZH6 1224 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 PDGFCQ9NRA1 345 aa21.8■■□□□ 1.08
SQSTM1-216ENST00000626660 FRMPD3Q5JV73 1810 aa21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 RBM47A0AV96 593 aaKnown RBP21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 CAPN2P17655 700 aa21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 ZNF76P36508 570 aa21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 MRPS9P82933 396 aaKnown RBP21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 GNL2Q13823 731 aaKnown RBP21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 BECN1Q14457 450 aa21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 KCNV1Q6PIU1 500 aa21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 U2AF1L4Q8WU68 220 aaKnown RBP21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 ZFP91Q96JP5 570 aaPredicted RBP21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 RTEL1Q9NZ71 1219 aa21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 MRVI1Q9Y6F6 885 aa21.79■■□□□ 1.08
SQSTM1-216ENST00000626660 H3BQV1 296 aa21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 M0R2N6 131 aa21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 NKRFO15226 690 aaKnown RBP eCLIP21.78■■□□□ 1.088e-8■□□□□ 10
SQSTM1-216ENST00000626660 SGPL1O95470 568 aa21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 TFRCP02786 760 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 PDCP20941 246 aa21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 ANO1Q5XXA6 986 aa21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 OXER1Q8TDS5 423 aa21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 INPP4AQ96PE3 977 aaPredicted RBP21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 FOXD4L1Q9NU39 408 aa21.78■■□□□ 1.08
SQSTM1-216ENST00000626660 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 DUSP11O75319 330 aaKnown RBP21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 CYP3A4P08684 503 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 TXNP10599 105 aaKnown RBP21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 GJA8P48165 433 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 DUSP28Q4G0W2 176 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 LARP1BQ659C4 914 aaKnown RBP21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 LHX8Q68G74 356 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 TBCKQ8TEA7 893 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 GPRASP2Q96D09 838 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 CDHR1Q96JP9 859 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 SPC25Q9HBM1 224 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 XPNPEP3Q9NQH7 507 aa21.77■■□□□ 1.08
SQSTM1-216ENST00000626660 PDE4DIPQ5VU43 2346 aa21.77■■□□□ 1.07
SQSTM1-216ENST00000626660 BTBD18B2RXH4 712 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 FIBPO43427 364 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 RGS20O76081 388 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 TGFB3P10600 412 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 SMPD1P17405 629 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 CENPFP49454 3210 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 NR5A1Q13285 461 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 PIK3AP1Q6ZUJ8 805 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 LENG1Q96BZ8 264 aaPredicted RBP21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 MXRA8Q9BRK3 442 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 AP5M1Q9H0R1 490 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 UBIAD1Q9Y5Z9 338 aa21.76■■□□□ 1.07
SQSTM1-216ENST00000626660 ICAM3P32942 547 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 USP11P51784 963 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 INF2Q27J81 1249 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 CEP55Q53EZ4 464 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 ARRDC4Q8NCT1 418 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 CRYGNQ8WXF5 182 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 CRISPLD2Q9H0B8 497 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 FOXP1Q9H334 677 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 JADE2Q9NQC1 790 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 OGDHLQ9ULD0 1010 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 Q9Y3F1 56 aa21.75■■□□□ 1.07
SQSTM1-216ENST00000626660 MAFGO15525 162 aa21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 ADCY6O43306 1168 aa21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 MYCNP04198 464 aaPredicted RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms