RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 KIF2AO00139 706 aaPredicted RBP18.29■□□□□ 0.52
LDB3-208ENST00000623007 CCT6AP40227 531 aaKnown RBP18.29■□□□□ 0.52
LDB3-208ENST00000623007 PRCPP42785 496 aa18.29■□□□□ 0.52
LDB3-208ENST00000623007 NR1I3Q14994 352 aa18.29■□□□□ 0.52
LDB3-208ENST00000623007 DNTTIP2Q5QJE6 756 aaKnown RBP18.29■□□□□ 0.52
LDB3-208ENST00000623007 SAMD7Q7Z3H4 446 aa18.29■□□□□ 0.52
LDB3-208ENST00000623007 LDHDQ86WU2 507 aa18.29■□□□□ 0.52
LDB3-208ENST00000623007 TRMT44Q8IYL2 757 aaKnown RBP18.29■□□□□ 0.52
LDB3-208ENST00000623007 ETNPPLQ8TBG4 499 aa18.29■□□□□ 0.52
LDB3-208ENST00000623007 MAGEC2Q9UBF1 373 aaPredicted RBP18.29■□□□□ 0.52
LDB3-208ENST00000623007 LIMA1Q9UHB6 759 aaKnown RBP18.29■□□□□ 0.52
LDB3-208ENST00000623007 CTDP1Q9Y5B0 961 aaPredicted RBP18.29■□□□□ 0.52
LDB3-208ENST00000623007 POTEMA6NI47 508 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 CASP1P29466 404 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 TRIM14Q14142 442 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 PRR16Q569H4 304 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 PNMA5Q96PV4 448 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 SAMSN1Q9NSI8 373 aaKnown RBP18.28■□□□□ 0.52
LDB3-208ENST00000623007 BLOC1S4Q9NUP1 217 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 ITIH6Q6UXX5 1313 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 OPLAHO14841 1288 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 ZBED4O75132 1171 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 CFBP00751 764 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 CCNE1P24864 410 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 RPA1P27694 616 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 OAZ1P54368 228 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 KIAA1755Q5JYT7 1200 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 NIPA1Q7RTP0 329 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 FCHSD1Q86WN1 690 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 C12orf42Q96LP6 360 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 WDR11Q9BZH6 1224 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 CCPG1Q9ULG6 757 aa18.28■□□□□ 0.52
LDB3-208ENST00000623007 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.28■□□□□ 0.52
LDB3-208ENST00000623007 HSD17B4P51659 736 aa18.27■□□□□ 0.52
LDB3-208ENST00000623007 NOL9Q5SY16 702 aaKnown RBP18.27■□□□□ 0.52
LDB3-208ENST00000623007 CDAN1Q8IWY9 1227 aa18.27■□□□□ 0.52
LDB3-208ENST00000623007 CCDC65Q8IXS2 484 aa18.27■□□□□ 0.52
LDB3-208ENST00000623007 IQCDQ96DY2 449 aa18.27■□□□□ 0.52
LDB3-208ENST00000623007 PRIMPOLQ96LW4 560 aa18.27■□□□□ 0.52
LDB3-208ENST00000623007 MED15Q96RN5 788 aa18.27■□□□□ 0.52
LDB3-208ENST00000623007 POLR3CQ9BUI4 534 aaPredicted RBP18.27■□□□□ 0.52
LDB3-208ENST00000623007 ADD3Q9UEY8 706 aaKnown RBP18.27■□□□□ 0.52
LDB3-208ENST00000623007 PYCARDQ9ULZ3 195 aa18.27■□□□□ 0.52
LDB3-208ENST00000623007 ZNF541Q9H0D2 1346 aa18.27■□□□□ 0.51
LDB3-208ENST00000623007 CCZ1BP86790 482 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 CCZ1P86791 482 aaPredicted RBP18.26■□□□□ 0.51
LDB3-208ENST00000623007 CCDC174Q6PII3 467 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 ARHGAP27Q6ZUM4 889 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 GUF1Q8N442 669 aaKnown RBP18.26■□□□□ 0.51
LDB3-208ENST00000623007 ZNF280CQ8ND82 737 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 P2RX5Q93086 422 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 CCDC51Q96ER9 411 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 NAP1L5Q96NT1 182 aaPredicted RBP18.26■□□□□ 0.51
LDB3-208ENST00000623007 PLIN2Q99541 437 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 NAA15Q9BXJ9 866 aaKnown RBP18.26■□□□□ 0.51
LDB3-208ENST00000623007 SLC38A10Q9HBR0 1119 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 PPP1R9AQ9ULJ8 1098 aa18.26■□□□□ 0.51
LDB3-208ENST00000623007 SHTN1A0MZ66 631 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 BCRP11274 1271 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 BACE1P56817 501 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 LRRC63Q05C16 580 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 ZYXQ15942 572 aaKnown RBP18.25■□□□□ 0.51
LDB3-208ENST00000623007 TCP11X2Q5H9J9 407 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 ANGEL2Q5VTE6 544 aaKnown RBP18.25■□□□□ 0.51
LDB3-208ENST00000623007 SMYD4Q8IYR2 804 aaPredicted RBP18.25■□□□□ 0.51
LDB3-208ENST00000623007 NLGN2Q8NFZ4 835 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 NEK9Q8TD19 979 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 LENG9Q96B70 501 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 DNM3Q9UQ16 869 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 GDAQ9Y2T3 454 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 MYPNQ86TC9 1320 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 KCNJ18B7U540 433 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 EGFRP00533 1210 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 STX17P56962 302 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 SNAP25P60880 206 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 LRMPQ12912 555 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 TBX2Q13207 712 aaPredicted RBP18.25■□□□□ 0.51
LDB3-208ENST00000623007 KCNJ12Q14500 433 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 MCM6Q14566 821 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 CEP55Q53EZ4 464 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 NBPF12Q5TAG4 269 aaPredicted RBP18.25■□□□□ 0.51
LDB3-208ENST00000623007 XRRA1Q6P2D8 792 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 PPFIBP1Q86W92 1011 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 RBM46Q8TBY0 533 aaKnown RBP18.25■□□□□ 0.51
LDB3-208ENST00000623007 TRIM47Q96LD4 638 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 TANGO6Q9C0B7 1094 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 TUFT1Q9NNX1 390 aa18.25■□□□□ 0.51
LDB3-208ENST00000623007 MYMKA6NI61 221 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 FAM86B1E9PN63 330 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 STX10O60499 249 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 FAM86B2P0C5J1 330 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 PRKCSHP14314 528 aaPredicted RBP18.24■□□□□ 0.51
LDB3-208ENST00000623007 PPP2R5CQ13362 524 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 CNGA4Q8IV77 575 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 DDX12PQ92771 950 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 TSG101Q99816 390 aa18.24■□□□□ 0.51
LDB3-208ENST00000623007 ADARB2Q9NS39 739 aaKnown RBP18.24■□□□□ 0.51
LDB3-208ENST00000623007 IGLV3-22A0A075B6J6 115 aa18.23■□□□□ 0.51
LDB3-208ENST00000623007 GOLGA6L9A6NEM1 432 aa18.23■□□□□ 0.51
LDB3-208ENST00000623007 N4BP3O15049 544 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms