RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CLIC2O15247 247 aa11.81□□□□□ -0.52
VPS11-208ENST00000621676 MED24O75448 989 aa11.81□□□□□ -0.52
VPS11-208ENST00000621676 RBM10P98175 930 aaKnown RBP11.81□□□□□ -0.52
VPS11-208ENST00000621676 KCNA1Q09470 495 aa11.81□□□□□ -0.52
VPS11-208ENST00000621676 ANKRD35Q8N283 1001 aa11.81□□□□□ -0.52
VPS11-208ENST00000621676 ZNF280CQ8ND82 737 aa11.81□□□□□ -0.52
VPS11-208ENST00000621676 RMDN3Q96TC7 470 aa11.81□□□□□ -0.52
VPS11-208ENST00000621676 MTA3Q9BTC8 594 aa11.81□□□□□ -0.52
VPS11-208ENST00000621676 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.81□□□□□ -0.52
VPS11-208ENST00000621676 ROBO3Q96MS0 1386 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 CCDC88AQ3V6T2 1871 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 SNHG28P0DPA3 235 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 EPHX2P34913 555 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 DDX12PQ92771 950 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 CCDC43Q96MW1 224 aaKnown RBP11.8□□□□□ -0.52
VPS11-208ENST00000621676 SLF1Q9BQI6 1058 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 MMTAG2Q9BU76 263 aaKnown RBP11.8□□□□□ -0.52
VPS11-208ENST00000621676 NMRK2Q9NPI5 230 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 EXOC1Q9NV70 894 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 RANBP2P49792 3224 aaKnown RBP11.8□□□□□ -0.52
VPS11-208ENST00000621676 GAS7O60861 476 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 ATP9AO75110 1047 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 SKILP12757 684 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 MARK3P27448 753 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 KLK7P49862 253 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 CEP135Q66GS9 1140 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 GPBP1Q86WP2 473 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 RNF146Q9NTX7 359 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 GINS2Q9Y248 185 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 TPM4P67936 248 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 PTPROQ16827 1216 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 TMEM63BQ5T3F8 832 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 LRCH2Q5VUJ6 765 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 ARHGEF16Q5VV41 709 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 TCERG1LQ5VWI1 586 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 PRPF38AQ8NAV1 312 aaKnown RBP11.8□□□□□ -0.52
VPS11-208ENST00000621676 ZNF577Q9BSK1 485 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 TMOD4Q9NZQ9 345 aa11.8□□□□□ -0.52
VPS11-208ENST00000621676 MSH4O15457 936 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 DNA2P51530 1060 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 NPEPPSP55786 919 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 NCAPHQ15003 741 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.79□□□□□ -0.52
VPS11-208ENST00000621676 SV2BQ7L1I2 683 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 DNAAF5Q86Y56 855 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 DCAF4Q8WV16 495 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 DYDC2Q96IM9 177 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 WDR18Q9BV38 432 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 M0R2N6 131 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 MDM2Q00987 491 aaPredicted RBP11.79□□□□□ -0.52
VPS11-208ENST00000621676 GRB10Q13322 594 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 GPC2Q8N158 579 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 SMCR8Q8TEV9 937 aaPredicted RBP11.79□□□□□ -0.52
VPS11-208ENST00000621676 CCDC34Q96HJ3 373 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 PCDH10Q9P2E7 1040 aa11.79□□□□□ -0.52
VPS11-208ENST00000621676 PRPF6O94906 941 aaKnown RBP11.78□□□□□ -0.52
VPS11-208ENST00000621676 BACE1P56817 501 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 IRX3P78415 501 aaPredicted RBP11.78□□□□□ -0.52
VPS11-208ENST00000621676 PLA2G4FQ68DD2 849 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 LARP4BQ92615 738 aaKnown RBP11.78□□□□□ -0.52
VPS11-208ENST00000621676 KIFC3Q9BVG8 833 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 GPRC5CQ9NQ84 441 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 A0A1B0GUL6 1792 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 CASZ1Q86V15 1759 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 A0A0U1RQJ8 604 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 USP2O75604 605 aaPredicted RBP11.78□□□□□ -0.52
VPS11-208ENST00000621676 RCAN1P53805 252 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 ZC2HC1CQ53FD0 456 aaPredicted RBP11.78□□□□□ -0.52
VPS11-208ENST00000621676 TMED8Q6PL24 325 aaPredicted RBP11.78□□□□□ -0.52
VPS11-208ENST00000621676 CATSPER3Q86XQ3 398 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 ATRIPQ8WXE1 791 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 KLRG1Q96E93 195 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 PPP1R9BQ96SB3 815 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 SYNRGQ9UMZ2 1314 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 BACH1O14867 736 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 PDE4CQ08493 712 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 MTF1Q14872 753 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 RNF207Q6ZRF8 634 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 PNMA5Q96PV4 448 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 HINFPQ9BQA5 517 aa11.78□□□□□ -0.52
VPS11-208ENST00000621676 POLR2AP24928 1970 aaKnown RBP11.77□□□□□ -0.52
VPS11-208ENST00000621676 TISP43B9A030 160 aa11.77□□□□□ -0.52
VPS11-208ENST00000621676 HARSP12081 509 aaKnown RBP11.77□□□□□ -0.52
VPS11-208ENST00000621676 DCAF15Q66K64 600 aa11.77□□□□□ -0.52
VPS11-208ENST00000621676 PDXDC2PQ6P474 469 aa11.77□□□□□ -0.52
VPS11-208ENST00000621676 FAM83AQ86UY5 434 aa11.77□□□□□ -0.52
VPS11-208ENST00000621676 CSGALNACT2Q8N6G5 542 aa11.77□□□□□ -0.52
VPS11-208ENST00000621676 ZKSCAN5Q9Y2L8 839 aa11.77□□□□□ -0.52
VPS11-208ENST00000621676 USO1O60763 962 aaKnown RBP11.77□□□□□ -0.53
VPS11-208ENST00000621676 ZBED4O75132 1171 aa11.77□□□□□ -0.53
VPS11-208ENST00000621676 CSDE1O75534 798 aaKnown RBP11.77□□□□□ -0.53
VPS11-208ENST00000621676 ITGB5P18084 799 aa11.77□□□□□ -0.53
VPS11-208ENST00000621676 LONP1P36776 959 aaKnown RBP11.77□□□□□ -0.53
VPS11-208ENST00000621676 MTIF2P46199 727 aaKnown RBP11.77□□□□□ -0.53
VPS11-208ENST00000621676 MKL1Q969V6 931 aa11.77□□□□□ -0.53
VPS11-208ENST00000621676 ZSWIM4Q9H7M6 989 aa11.77□□□□□ -0.53
VPS11-208ENST00000621676 SH3GLB2Q9NR46 395 aa11.77□□□□□ -0.53
VPS11-208ENST00000621676 DDX60LQ5H9U9 1706 aaKnown RBP11.77□□□□□ -0.53
VPS11-208ENST00000621676 CTNND1O60716 968 aaKnown RBP11.76□□□□□ -0.53
VPS11-208ENST00000621676 UBXN1Q04323 297 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms