RNA–Protein interactions for RNA: ENST00000605814.1

HMGB1P50-201, Transcript of high mobility group box 1 pseudogene 50, humanhuman

BASIC

Gene HMGB1P50, Length 607 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P50-201ENST00000605814 CCDC69A6NI79 296 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 H3BS24 57 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 POLR3GO15318 223 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 MYO1BO43795 1136 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 NRDCO43847 1150 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 LRIG2O94898 1065 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 ZNF865P0CJ78 1059 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 U2AF1L5P0DN76 240 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 LMNB1P20700 586 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 PDCP20941 246 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 CHMLP26374 656 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 PDE1AP54750 535 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 GNAI1P63096 354 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 KRT85P78386 507 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 U2AF1Q01081 240 aaKnown RBP eCLIP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 APOBRQ0VD83 1088 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 NKPD1Q17RQ9 610 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 NBPF9Q3BBW0 867 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 ANO6Q4KMQ2 910 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 LCE4AQ5TA78 99 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 ZBTB37Q5TC79 503 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 CCDC30Q5VVM6 783 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 E4F1Q66K89 784 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 ATL3Q6DD88 541 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 CIAPIN1Q6FI81 312 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 LILRA6Q6PI73 481 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 TRIM65Q6PJ69 517 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 HDXQ7Z353 690 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 TADA2BQ86TJ2 420 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 LUZP1Q86V48 1076 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 JMYQ8N9B5 988 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 MAGEC3Q8TD91 643 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 TSR2Q969E8 191 aaKnown RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 ZBTB9Q96C00 473 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 CHMP4CQ96CF2 233 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 HSPA12BQ96MM6 686 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 RBCK1Q9BYM8 510 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 TNMDQ9H2S6 317 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 EPB41L4BQ9H329 900 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 TMX1Q9H3N1 280 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 VIPAS39Q9H9C1 493 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 ATP13A1Q9HD20 1204 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 ZCCHC17Q9NP64 241 aaKnown RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 DCP1AQ9NPI6 582 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 SMC3Q9UQE7 1217 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 EXOC6BQ9Y2D4 811 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 COL3A1P02461 1466 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 NRXN1Q9ULB1 1477 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 CACNA1FO60840 1977 aa4.67□□□□□ -1.66
HMGB1P50-201ENST00000605814 CDC42BPBQ9Y5S2 1711 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 CPSF1Q10570 1443 aaKnown RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 ATP10DQ9P241 1426 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 MAP3K4Q9Y6R4 1608 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 USP27XA6NNY8 438 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 GOLGA6L19H0YKK7 550 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 SRGAP3O43295 1099 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 HMMRO75330 724 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 FBXO24O75426 580 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 EIF3JO75822 258 aaKnown RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 NEFHP12036 1026 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 CYP7A1P22680 504 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 HNRNPH1P31943 449 aaKnown RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 GDNFP39905 211 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 SSR1P43307 286 aaKnown RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 IRX1P78414 480 aaPredicted RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 ZNF252P-AS1Q0IIN9 211 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 MLECQ14165 292 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 VPS53Q5VIR6 699 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 TTLL5Q6EMB2 1281 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 CEP85Q6P2H3 762 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 LRRC31Q6UY01 552 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 TTC6Q86TZ1 520 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 SPATS2Q86XZ4 545 aaKnown RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 C16orf71Q8IYS4 520 aaPredicted RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 CNPY4Q8N129 248 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 GPATCH11Q8N954 259 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 MSANTD4Q8NCY6 345 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 FAM71BQ8TC56 605 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 DNAAF4Q8WXU2 420 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 MIEF2Q96C03 454 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 PPP1R13BQ96KQ4 1090 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 FAM210AQ96ND0 272 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 PSMD1Q99460 953 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 THUMPD2Q9BTF0 503 aaKnown RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 GBP3Q9H0R5 595 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 L1RE1Q9UN81 338 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 MAGI1Q96QZ7 1491 aaPredicted RBP4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 ANKRD26Q9UPS8 1709 aa4.66□□□□□ -1.66
HMGB1P50-201ENST00000605814 ABCA8O94911 1581 aa4.65□□□□□ -1.66
HMGB1P50-201ENST00000605814 SAMD9LQ8IVG5 1584 aa4.65□□□□□ -1.66
HMGB1P50-201ENST00000605814 NSD3Q9BZ95 1437 aa4.65□□□□□ -1.66
HMGB1P50-201ENST00000605814 ZBTB7CA1YPR0 619 aa4.65□□□□□ -1.67
HMGB1P50-201ENST00000605814 TTC36A6NLP5 189 aa4.65□□□□□ -1.67
HMGB1P50-201ENST00000605814 PATL2C9JE40 543 aaKnown RBP4.65□□□□□ -1.67
HMGB1P50-201ENST00000605814 NPIPB6E9PJ23 425 aa4.65□□□□□ -1.67
HMGB1P50-201ENST00000605814 GOLIM4O00461 696 aa4.65□□□□□ -1.67
HMGB1P50-201ENST00000605814 ZSCAN12O43309 604 aa4.65□□□□□ -1.67
HMGB1P50-201ENST00000605814 SMC2O95347 1197 aa4.65□□□□□ -1.67
HMGB1P50-201ENST00000605814 CBX7O95931 251 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms