RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 EPOPA6NHQ4 379 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 PITPNM1O00562 1244 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 PLA2G6O60733 806 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 ABCB7O75027 752 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 BAIAP3O94812 1187 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 UPP2O95045 317 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 ZNF286BP0CG31 522 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 MYCLP12524 364 aaPredicted RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 SELPP16109 830 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 EIF2AK2P19525 551 aaKnown RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 IBSPP21815 317 aaPredicted RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 WDR5P61964 334 aaKnown RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 IKBKEQ14164 716 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 DGKDQ16760 1214 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 LY6KQ17RY6 165 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 VPS53Q5VIR6 699 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 FBXO22Q8NEZ5 403 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 CAGE1Q8TC20 777 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 OTUD7AQ8TE49 926 aaPredicted RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 NSUN6Q8TEA1 469 aaKnown RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 AFAP1L1Q8TED9 768 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 TMEM47Q9BQJ4 181 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 KATNAL1Q9BW62 490 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 UBA5Q9GZZ9 404 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 RNF41Q9H4P4 317 aaPredicted RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 DCTPP1Q9H773 170 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 FAM186AA6NE01 2351 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 TPRP12270 2363 aaKnown RBP6.06□□□□□ -1.44
VRK3-226ENST00000602029 TECTAO75443 2155 aa6.06□□□□□ -1.44
VRK3-226ENST00000602029 RIF1Q5UIP0 2472 aaKnown RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 COL4A4P53420 1690 aaPredicted RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 CACNA1HO95180 2353 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 LCHNA4D1U4 455 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 PI4K2BG5E9Z4 385 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 NOP56O00567 594 aaKnown RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 CFBP00751 764 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 AMHP03971 560 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 MMP3P08254 477 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 PDHBP11177 359 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 PDE4AP27815 886 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 THPOP40225 353 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 MFAP1P55081 439 aaKnown RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 NKX3-2P78367 333 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 DEFB103AP81534 67 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 PTPN11Q06124 597 aaPredicted RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 STXBP2Q15833 593 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 CDC37Q16543 378 aaPredicted RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 PTPROQ16827 1216 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 GDF6Q6KF10 455 aaPredicted RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 CNKSR3Q6P9H4 555 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 IQCA1Q86XH1 822 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 FBXO11Q86XK2 927 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 MCF2L2Q86YR7 1114 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 DNERQ8NFT8 737 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 ESR2Q92731 530 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 EVI5LQ96CN4 794 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 TGS1Q96RS0 853 aaKnown RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 YME1L1Q96TA2 773 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 RMDN3Q96TC7 470 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 UBAC1Q9BSL1 405 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 CPVLQ9H3G5 476 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 DIAPH3Q9NSV4 1193 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.05□□□□□ -1.44
VRK3-226ENST00000602029 ZFHX4Q86UP3 3567 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 ZFHX2Q9C0A1 2572 aaPredicted RBP6.05□□□□□ -1.44
VRK3-226ENST00000602029 EPG5Q9HCE0 2579 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 KMT2EQ8IZD2 1858 aa6.05□□□□□ -1.44
VRK3-226ENST00000602029 PARP14Q460N5 1801 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 ABCB11O95342 1321 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 PTPRSQ13332 1948 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 LOC102724159A0A0B4J2E5 919 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 ABHD14A-ACY1A0A1B0GW23 586 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 A6NJR5 290 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 H3BQ06 376 aaPredicted RBP6.04□□□□□ -1.44
VRK3-226ENST00000602029 ZNF213O14771 459 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 ORC4O43929 436 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 EFCAB14O75071 495 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 KDM4AO75164 1064 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 KRT37O76014 449 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 ARHGEF15O94989 841 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 ARIH2O95376 493 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 PARNO95453 639 aaKnown RBP6.04□□□□□ -1.44
VRK3-226ENST00000602029 CTSHP09668 335 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 PARP1P09874 1014 aaKnown RBP6.04□□□□□ -1.44
VRK3-226ENST00000602029 CKBP12277 381 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 PSEN2P49810 448 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 SP4Q02446 784 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 ZNF543Q08ER8 600 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 NMIQ13287 307 aaPredicted RBP6.04□□□□□ -1.44
VRK3-226ENST00000602029 MFSD10Q14728 455 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 PWP2Q15269 919 aaKnown RBP6.04□□□□□ -1.44
VRK3-226ENST00000602029 KIAA0753Q2KHM9 967 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 MCMDC2Q4G0Z9 681 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 GPATCH4Q5T3I0 446 aaKnown RBP6.04□□□□□ -1.44
VRK3-226ENST00000602029 PTCRAQ6ISU1 281 aaPredicted RBP6.04□□□□□ -1.44
VRK3-226ENST00000602029 SPRED2Q7Z698 418 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 HOMER1Q86YM7 354 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 PNMA1Q8ND90 353 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 PI4K2BQ8TCG2 481 aa6.04□□□□□ -1.44
VRK3-226ENST00000602029 MORC4Q8TE76 937 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms