RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	USP17L6P	Q6QN14	398 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	SYNE3	Q6ZMZ3	975 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	FERMT2	Q96AC1	680 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	KIF2C	Q99661	725 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	SEZ6L	Q9BYH1	1024 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	BARHL2	Q9NY43	387 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	CHD7	Q9P2D1	2997 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	CCDC196	A0A1B0GTZ2	297 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	hCG_1642624	A0A1W2PR95	340 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	ESYT2	A0FGR8	921 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	DYNC1LI2	O43237	492 aa	Predicted RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	PRPF3	O43395	683 aa	Known RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	STAM2	O75886	525 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	CD4	P01730	458 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	C6orf222	P0C671	652 aa	Predicted RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	EIF2AK2	P19525	551 aa	Known RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	PURA	Q00577	322 aa	Known RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	SP2	Q02086	613 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	SEMA3F	Q13275	785 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	PFKFB3	Q16875	520 aa	Predicted RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	GNAS	Q5JWF2	1037 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	PCNX4	Q63HM2	1172 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	XRRA1	Q6P2D8	792 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	CCDC82	Q8N4S0	544 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	MPHOSPH6	Q99547	160 aa	Known RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	UPF3B	Q9BZI7	483 aa	Known RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	SPC25	Q9HBM1	224 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	RIC8A	Q9NPQ8	531 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	PDLIM7	Q9NR12	457 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	SEC63	Q9UGP8	760 aa	Known RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628	TBX21	Q9UL17	535 aa		10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628		V9GY48	417 aa	Predicted RBP	10.13	□□□□□ -0.79
SSBP4-208	ENST00000600628		A0A1W2PPC1	479 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	TRIM43B	A6NCK2	446 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	SPATA31C2	B4DYI2	1134 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	KIAA0355	O15063	1070 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	EIF5B	O60841	1220 aa	Known RBP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	CABYR	O75952	493 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	TXN	P10599	105 aa	Known RBP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	ITGB8	P26012	769 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	MAGEA10	P43363	369 aa	Predicted RBP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	FXR1	P51114	621 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	BEX3	Q00994	111 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	TLE2	Q04725	743 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	FAAP100	Q0VG06	881 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	TTLL4	Q14679	1199 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	LY6K	Q17RY6	165 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	TRIM60	Q495X7	471 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	ARHGEF16	Q5VV41	709 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	MYSM1	Q5VVJ2	828 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	NOL8	Q76FK4	1167 aa	Known RBP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	FAM126B	Q8IXS8	530 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	COPS5	Q92905	334 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	TRIM43	Q96BQ3	446 aa	Predicted RBP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	RNF26	Q9BY78	433 aa	Predicted RBP	10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	ZMYND12	Q9H0C1	365 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	PSTPIP2	Q9H939	334 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	ATP11B	Q9Y2G3	1177 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	EYS	Q5T1H1	3165 aa		10.12	□□□□□ -0.79
SSBP4-208	ENST00000600628	TRANK1	O15050	2925 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	ARVCF	O00192	962 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	ADAMTS3	O15072	1205 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	EDIL3	O43854	480 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	SCG2	P13521	617 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	CCND2	P30279	289 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	NPY5R	Q15761	445 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	KCNV1	Q6PIU1	500 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	CXCL17	Q6UXB2	119 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	SH3RF1	Q7Z6J0	888 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	FAM177A1	Q8N128	213 aa	Predicted RBP	10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	PIBF1	Q8WXW3	757 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	KAT2B	Q92831	832 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	GLT1D1	Q96MS3	346 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	CTAGE1	Q96RT6	745 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	SENP7	Q9BQF6	1050 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	AP5M1	Q9H0R1	490 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	NCOA5	Q9HCD5	579 aa	Known RBP	10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	STARD7	Q9NQZ5	370 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	PRKAG2	Q9UGJ0	569 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	UBIAD1	Q9Y5Z9	338 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	TRIP12	Q14669	1992 aa	Predicted RBP	10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	WDR81	Q562E7	1941 aa		10.11	□□□□□ -0.79
SSBP4-208	ENST00000600628	MROH7	Q68CQ1	1323 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628		A0A0U1RQG5	324 aa	Predicted RBP	10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628		M0R2N6	131 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	HAS3	O00219	553 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	KPNA6	O60684	536 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	PFKFB2	O60825	505 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	FOS	P01100	380 aa	Predicted RBP	10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	GH1	P01241	217 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	ITGB5	P18084	799 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	UBA1	P22314	1058 aa	Known RBP	10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	HOXC8	P31273	242 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	RBM25	P49756	843 aa	Known RBP	10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	CPT1A	P50416	773 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	MDM2	Q00987	491 aa	Predicted RBP	10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	UBE2S	Q16763	222 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	CELF3	Q5SZQ8	465 aa	Known RBP	10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	SEPT14	Q6ZU15	432 aa		10.1	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms