RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 BRF1Q92994 677 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 TRIM43Q96BQ3 446 aaPredicted RBP11.19□□□□□ -0.62
VRK3-215ENST00000599138 SEZ6LQ9BYH1 1024 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 DDX41Q9UJV9 622 aaKnown RBP11.19□□□□□ -0.62
VRK3-215ENST00000599138 KIAA0355O15063 1070 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 PQBP1O60828 265 aaKnown RBP11.18□□□□□ -0.62
VRK3-215ENST00000599138 CLTBP09497 229 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 ADD1P35611 737 aaKnown RBP11.18□□□□□ -0.62
VRK3-215ENST00000599138 CPT1AP50416 773 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 METAP2P50579 478 aaKnown RBP eCLIP11.18□□□□□ -0.62
VRK3-215ENST00000599138 FGD1P98174 961 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 PURAQ00577 322 aaKnown RBP11.18□□□□□ -0.62
VRK3-215ENST00000599138 ARHGAP1Q07960 439 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 FAAP100Q0VG06 881 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 LY6KQ17RY6 165 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 WWC2Q6AWC2 1192 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 TYW1BQ6NUM6 668 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 TEX2Q8IWB9 1127 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 FAM126BQ8IXS8 530 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 OR6J1Q8NGC5 347 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 EMID1Q96A84 441 aaPredicted RBP11.18□□□□□ -0.62
VRK3-215ENST00000599138 IL17RAQ96F46 866 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 PSTPIP2Q9H939 334 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 POLR3EQ9NVU0 708 aa11.18□□□□□ -0.62
VRK3-215ENST00000599138 V9GY48 417 aaPredicted RBP11.18□□□□□ -0.62
VRK3-215ENST00000599138 MROH7Q68CQ1 1323 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 CCDC196A0A1B0GTZ2 297 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 DCDC2CA8MYV0 355 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 hCG_1984214I3L0E3 225 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 STAM2O75886 525 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 GH1P01241 217 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 CD4P01730 458 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 TGFB3P10600 412 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 MYCLP12524 364 aaPredicted RBP11.17□□□□□ -0.62
VRK3-215ENST00000599138 ITGB8P26012 769 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 CCND2P30279 289 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 FXR1P51114 621 aaKnown RBP eCLIP11.17□□□□□ -0.62
VRK3-215ENST00000599138 MRPS9P82933 396 aaKnown RBP11.17□□□□□ -0.62
VRK3-215ENST00000599138 MDM2Q00987 491 aaPredicted RBP11.17□□□□□ -0.62
VRK3-215ENST00000599138 ITGA7Q13683 1181 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 TOB2Q14106 344 aaPredicted RBP11.17□□□□□ -0.62
VRK3-215ENST00000599138 NTRK3Q16288 839 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 XRRA1Q6P2D8 792 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 KCNV1Q6PIU1 500 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 ZNF713Q8N859 430 aaPredicted RBP11.17□□□□□ -0.62
VRK3-215ENST00000599138 SMARCC2Q8TAQ2 1214 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 GPKOWQ92917 476 aaPredicted RBP eCLIP11.17□□□□□ -0.62
VRK3-215ENST00000599138 CUL5Q93034 780 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 VTI1AQ96AJ9 217 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 INPP4AQ96PE3 977 aaPredicted RBP11.17□□□□□ -0.62
VRK3-215ENST00000599138 PRKAG2Q9UGJ0 569 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 TBX21Q9UL17 535 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 CYP46A1Q9Y6A2 500 aa11.17□□□□□ -0.62
VRK3-215ENST00000599138 STXBP3O00186 592 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 KPNA6O60684 536 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 MMP3P08254 477 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 HOXD8P13378 290 aaPredicted RBP11.16□□□□□ -0.62
VRK3-215ENST00000599138 PDIA3P30101 505 aaKnown RBP11.16□□□□□ -0.62
VRK3-215ENST00000599138 ICAM3P32942 547 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 ANAPC15P60006 121 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 PSMC6P62333 389 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 SP2Q02086 613 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 BRDTQ58F21 947 aaPredicted RBP11.16□□□□□ -0.62
VRK3-215ENST00000599138 PCNX4Q63HM2 1172 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 PPP1R18Q6NYC8 613 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 HEATR3Q7Z4Q2 680 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 AFG1LQ8WV93 481 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 MTG1Q9BT17 334 aaPredicted RBP11.16□□□□□ -0.62
VRK3-215ENST00000599138 UPF3BQ9BZI7 483 aaKnown RBP11.16□□□□□ -0.62
VRK3-215ENST00000599138 UBE2OQ9C0C9 1292 aaKnown RBP11.16□□□□□ -0.62
VRK3-215ENST00000599138 PRDM5Q9NQX1 630 aaPredicted RBP11.16□□□□□ -0.62
VRK3-215ENST00000599138 BARHL2Q9NY43 387 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 MRVI1Q9Y6F6 885 aa11.16□□□□□ -0.62
VRK3-215ENST00000599138 SPATA31C2B4DYI2 1134 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 PRPF3O43395 683 aaKnown RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 MYL3P08590 195 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 UBA1P22314 1058 aaKnown RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 SEMA3FQ13275 785 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 LAMC2Q13753 1193 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 PKN1Q16512 942 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 PFKFB3Q16875 520 aaPredicted RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 CELF3Q5SZQ8 465 aaKnown RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 MYSM1Q5VVJ2 828 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 TDHQ8IZJ6 230 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 PPTC7Q8NI37 304 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 KAT2BQ92831 832 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 BADQ92934 168 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 ZNF274Q96GC6 653 aaPredicted RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 ZFP91Q96JP5 570 aaPredicted RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 LBHD1Q9BQE6 289 aaPredicted RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 ALDH8A1Q9H2A2 487 aaPredicted RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 RIC8AQ9NPQ8 531 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 TMEM39AQ9NV64 488 aa11.15□□□□□ -0.62
VRK3-215ENST00000599138 NAP1L2Q9ULW6 460 aaPredicted RBP11.15□□□□□ -0.62
VRK3-215ENST00000599138 LAMA2P24043 3122 aaKnown RBP11.14□□□□□ -0.63
VRK3-215ENST00000599138 TLR3O15455 904 aaKnown RBP11.14□□□□□ -0.63
VRK3-215ENST00000599138 EIF5BO60841 1220 aaKnown RBP11.14□□□□□ -0.63
VRK3-215ENST00000599138 SLC34A2O95436 690 aa11.14□□□□□ -0.63
VRK3-215ENST00000599138 TIMP1P01033 207 aa11.14□□□□□ -0.63
VRK3-215ENST00000599138 SCG2P13521 617 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms