RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ALDH8A1Q9H2A2 487 aaPredicted RBP15.93■□□□□ 0.14
UPF1-205ENST00000598209 STARD7Q9NQZ5 370 aa15.93■□□□□ 0.14
UPF1-205ENST00000598209 BARHL2Q9NY43 387 aa15.93■□□□□ 0.14
UPF1-205ENST00000598209 RBM27Q9P2N5 1060 aaKnown RBP15.93■□□□□ 0.14
UPF1-205ENST00000598209 DOCK5Q9H7D0 1870 aa15.93■□□□□ 0.14
UPF1-205ENST00000598209 ZEB2O60315 1214 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 PPFIA3O75145 1194 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 IFNAR1P17181 557 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 AKAP17AQ02040 695 aaKnown RBP15.92■□□□□ 0.14
UPF1-205ENST00000598209 STK3Q13188 491 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 SNX17Q15036 470 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 LY6KQ17RY6 165 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 ZFP91Q96JP5 570 aaPredicted RBP15.92■□□□□ 0.14
UPF1-205ENST00000598209 GLT1D1Q96MS3 346 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 SLC26A6Q9BXS9 759 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 RNF26Q9BY78 433 aaPredicted RBP15.92■□□□□ 0.14
UPF1-205ENST00000598209 ATP11BQ9Y2G3 1177 aa15.92■□□□□ 0.14
UPF1-205ENST00000598209 RGS20O76081 388 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 ADCY7P51828 1080 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 AK2P54819 239 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 ANKRD1Q15327 319 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 PKN1Q16512 942 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 TRIM60Q495X7 471 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 C1orf53Q5VUE5 145 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 VTI1AQ96AJ9 217 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 RIC8AQ9NPQ8 531 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 TPCN1Q9ULQ1 816 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 ZMYND8Q9ULU4 1186 aaPredicted RBP15.91■□□□□ 0.14
UPF1-205ENST00000598209 MRVI1Q9Y6F6 885 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 ELP1O95163 1332 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 DNAH12Q6ZR08 3092 aa15.91■□□□□ 0.14
UPF1-205ENST00000598209 SMCO2A6NFE2 343 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 SPDYE3A6NKU9 549 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 CPLX1O14810 134 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 GH1P01241 217 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 CPT1AP50416 773 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 NEK4P51957 841 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 MRPS9P82933 396 aaKnown RBP15.9■□□□□ 0.14
UPF1-205ENST00000598209 CXCL17Q6UXB2 119 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 SLKQ9H2G2 1235 aaPredicted RBP15.9■□□□□ 0.14
UPF1-205ENST00000598209 DDX41Q9UJV9 622 aaKnown RBP15.9■□□□□ 0.14
UPF1-205ENST00000598209 PCDHA6Q9UN73 950 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 PCDHA8Q9Y5H6 950 aa15.9■□□□□ 0.14
UPF1-205ENST00000598209 STAM2O75886 525 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 CABYRO75952 493 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 SYN1P17600 705 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 ARHGAP1Q07960 439 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 SSRP1Q08945 709 aaKnown RBP15.89■□□□□ 0.13
UPF1-205ENST00000598209 SCRN1Q12765 414 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 BRDTQ58F21 947 aaPredicted RBP15.89■□□□□ 0.13
UPF1-205ENST00000598209 PCNX4Q63HM2 1172 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 XRRA1Q6P2D8 792 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 KCNV1Q6PIU1 500 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 CPLX2Q6PUV4 134 aaKnown RBP15.89■□□□□ 0.13
UPF1-205ENST00000598209 TEX2Q8IWB9 1127 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 TRIM22Q8IYM9 498 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 CCDC12Q8WUD4 166 aaPredicted RBP15.89■□□□□ 0.13
UPF1-205ENST00000598209 GLT8D2Q9H1C3 349 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 RTEL1Q9NZ71 1219 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 SCN10AQ9Y5Y9 1956 aa15.89■□□□□ 0.13
UPF1-205ENST00000598209 A0A0U1RQG5 324 aaPredicted RBP15.88■□□□□ 0.13
UPF1-205ENST00000598209 ESYT2A0FGR8 921 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 PFKFB2O60825 505 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 MYL3P08590 195 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 TLE2Q04725 743 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 GNPTABQ3T906 1256 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 INPP4AQ96PE3 977 aaPredicted RBP15.88■□□□□ 0.13
UPF1-205ENST00000598209 C22orf23Q9BZE7 217 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 ZMYND12Q9H0C1 365 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 EHMT1Q9H9B1 1298 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 POLR3EQ9NVU0 708 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 LTBP2Q14767 1821 aa15.88■□□□□ 0.13
UPF1-205ENST00000598209 A6NJR5 290 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 ARVCFO00192 962 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 PQBP1O60828 265 aaKnown RBP15.87■□□□□ 0.13
UPF1-205ENST00000598209 FOSP01100 380 aaPredicted RBP15.87■□□□□ 0.13
UPF1-205ENST00000598209 TGFB3P10600 412 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 ICAM3P32942 547 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 CLK2P49760 499 aaKnown RBP15.87■□□□□ 0.13
UPF1-205ENST00000598209 PURAQ00577 322 aaKnown RBP15.87■□□□□ 0.13
UPF1-205ENST00000598209 DHX37Q8IY37 1157 aaKnown RBP15.87■□□□□ 0.13
UPF1-205ENST00000598209 AFG1LQ8WV93 481 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 PGBD1Q96JS3 809 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 ANO3Q9BYT9 981 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 C6orf50Q9HD87 102 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 TMEM260Q9NX78 707 aa15.87■□□□□ 0.13
UPF1-205ENST00000598209 FIBPO43427 364 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 KPNA6O60684 536 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 CDKL5O76039 1030 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 DEXIO95424 95 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 GGPS1O95749 300 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 MMP3P08254 477 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 UBA1P22314 1058 aaKnown RBP15.86■□□□□ 0.13
UPF1-205ENST00000598209 CDK7P50613 346 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 PSMC6P62333 389 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 SP2Q02086 613 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 SEMA3FQ13275 785 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 AP3B2Q13367 1082 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 ITGA7Q13683 1181 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms